Browse Element(s) Details


OsAffx.25108.1.S1_x_at

Description gb:NM_188441.1
DB_XREF= gi:34903965
GEN=OSJNBa0038J17.28
TID=OsAffx.25108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0038J17.28 (OSJNBa0038J17.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g116807/11transposon protein, putative, unclassified
LOC_Os04g103905/11transposon protein, putative, unclassified
LOC_Os03g165405/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25108.1.S1_x_at--567--10214Chr03:9099978..9100002 (25 bp)
TATTTTGGCATCACTATGGAGGTCA
LOC_Os03g16540
OsAffx.25108.1.S1_x_at--535--1013Chr03:9101708..9101732 (25 bp)
AGGTTTCTCACTTTGGCCCAACAAG
LOC_Os03g16540
OsAffx.25108.1.S1_x_at--378--10233Chr03:9101719..9101743 (25 bp)
TTTGGCCCAACAAGCTGCTAGCTAT
LOC_Os03g16540
OsAffx.25108.1.S1_x_at--83--4873Chr03:9101735..9101759 (25 bp)
GCTAGCTATCCTGAGTGCACATTGT
LOC_Os03g16540
OsAffx.25108.1.S1_x_at--102--2073Chr03:9101871..9101895 (25 bp)
ACTTGTTGAGTAATGCACGCCTAAA
LOC_Os03g16540
OsAffx.25108.1.S1_x_at--1107--6091Chr01:6295882..6295906 (25 bp)
GAGTCTGGAGAATACATGCACCTAA
LOC_Os01g11680
OsAffx.25108.1.S1_x_at--83--3112Chr04:5612348..5612372 (25 bp)
AATAGCTTCACTCAGCTTTTGACGG
LOC_Os04g10390
OsAffx.25108.1.S1_x_at--121--10751Chr01:6295130..6295269 (25 bp)
TTGACGGCTTGGCAACAACGGTCGC
NONE
OsAffx.25108.1.S1_x_at--1093--8171NONE
GGAAGCTCTCGCGAAGCAACAGCGC
NONE
OsAffx.25108.1.S1_x_at--660--3271Chr01:6294692..6294716 (25 bp)
CAACAGCGCCGTGAGATGCCGATCG
NONE
OsAffx.25108.1.S1_x_at--561--6354Chr05:14531046..14531070 (25 bp)
GATGCCGATCGGACGATGGATCGAC
NONE
Target Sequence 
TATTTTGGCATCACTATGGAGGTCAAAAAGGCTTTGAGGTCAAGAAAAGGTTTCTCACTTTGGCCCAACAAGCTGCTAGC
TATCCTGAGTGCACATTGTTAGTAAATAATACACTTGACATTCTTAGCAAGCAAATTGAAGAGCACCTCAGTGGATATGC
TAGTACTTCAGATCAAAGTGCAACCCACAAGGAGGTTATGCCCCCAAATAACTTGTTGAGTAATGCACGCCTAAAGAAAA
AGGAGGAACAAAAGACTAGGCAAAATACACTCCATGCTGGTGCAGCAACACAAGTGGCAGAAGATAGTTTTGCTATGGAC
AAGGAGGAGTCTGGAGAATACATGCACCTAAATAGCTTCACTCAGCTTTTGACGGCTTGGCAACAACGGTCGCCCTTTCT
CCCATTTTTGTTCGGCTCTTGCGATTCCTCCGACGTGGGTGGTGGTGAAGAGCTTGGCGCCACCGCCGCCGCCGCTGCTG
TGGAAGCCGTCGTTGTCGAGGACGGCAACGCCTGGAAGCTCTCGCGAAGCAACAGCGCCGTGAGATGCCGATCGGACGAT
GGATCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25108.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis