Browse Element(s) Details


OsAffx.25148.1.S1_at

Description tigr:9631.m01955
TID=OsAffx.25148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1974011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein
LOC_Os03g19710OsAffx.25147.1.S1_at11/113+11067059..11069406hypothetical protein
LOC_Os03g19710OsAffx.31861.1.S1_at2/113+11067059..11069406hypothetical protein
LOC_Os03g19720Os.6965.1.S1_at11/113+11072407..11073391EF hand family protein, expressed
LOC_Os03g19724Os.51868.1.S1_at11/113+11073421..11074496expressed protein
LOC_Os03g19730Os.51868.2.S1_at10/113+11073665..11074738expressed protein
LOC_Os03g19740OsAffx.25148.1.S1_at11/113+11076256..11076730hypothetical protein
LOC_Os03g19750OsAffx.30515.4.S1_x_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.4.S1_at11/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.1.S1_x_at3/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.2.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_x_at2/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19750OsAffx.30515.5.S1_at1/113+11077913..11079986hAT family dimerisation domain containing protein
LOC_Os03g19760Os.20461.1.S2_s_at11/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.20461.1.S1_at10/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g19760Os.54720.1.S1_at1/113+11083453..11101280HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25148.1.S1_at--627--8631Chr03:11076513..11076537 (25 bp)
TGGGTGTGCTCGAGACAACGCCACT
LOC_Os03g19740
OsAffx.25148.1.S1_at--963--7711Chr03:11076514..11076538 (25 bp)
GGGTGTGCTCGAGACAACGCCACTC
LOC_Os03g19740
OsAffx.25148.1.S1_at--717--8691Chr03:11076517..11076541 (25 bp)
TGTGCTCGAGACAACGCCACTCCGA
LOC_Os03g19740
OsAffx.25148.1.S1_at--864--5971Chr03:11076524..11076548 (25 bp)
GAGACAACGCCACTCCGACGGTCGT
LOC_Os03g19740
OsAffx.25148.1.S1_at--821--9291Chr03:11076537..11076561 (25 bp)
TCCGACGGTCGTCTCACCGTGCAAG
LOC_Os03g19740
OsAffx.25148.1.S1_at--807--5751Chr03:11076540..11076564 (25 bp)
GACGGTCGTCTCACCGTGCAAGCAC
LOC_Os03g19740
OsAffx.25148.1.S1_at--902--7191Chr03:11076544..11076568 (25 bp)
GTCGTCTCACCGTGCAAGCACCGGT
LOC_Os03g19740
OsAffx.25148.1.S1_at--753--7151Chr03:11076547..11076571 (25 bp)
GTCTCACCGTGCAAGCACCGGTGGT
LOC_Os03g19740
OsAffx.25148.1.S1_at--344--3931Chr03:11076624..11076648 (25 bp)
CGGCGCTCACCGTAGACCGCGAAGA
LOC_Os03g19740
OsAffx.25148.1.S1_at--910--8391Chr03:11076625..11076649 (25 bp)
GGCGCTCACCGTAGACCGCGAAGAC
LOC_Os03g19740
OsAffx.25148.1.S1_at--879--4211Chr03:11076633..11076657 (25 bp)
CCGTAGACCGCGAAGACCACCACCT
LOC_Os03g19740
Target Sequence 
TGGGTGTGCTCGAGACAACGCCACTCCGACGGTCGTCTCACCGTGCAAGCACCGGTGGTGGTGAAGCAGGTGCCGGAGCG
GAGGAACTCGAGGAGGGTGGCTCGGGGTCACCGGCGCTCACCGTAGACCGCGAAGACCACCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis