Browse Element(s) Details


OsAffx.2526.1.S1_at

Description tigr:9630.m00603
TID=OsAffx.2526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mavicyanin. (vegetable marrow, summer squash, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0669011/11early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g066701/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2526.1.S1_at--448--4611Chr02:3357115..3357139 (25 bp)
GCGACGCAGTACAAGGTCGGCGGCG
LOC_Os02g06690
OsAffx.2526.1.S1_at--328--8391Chr02:3357166..3357190 (25 bp)
GGCGACGAGCCGTACAACACCTGGG
LOC_Os02g06690
OsAffx.2526.1.S1_at--994--1671Chr02:3357173..3357197 (25 bp)
AGCCGTACAACACCTGGGCCGAGAA
LOC_Os02g06690
OsAffx.2526.1.S1_at--980--8651Chr02:3357187..3357211 (25 bp)
TGGGCCGAGAAGACCAGCTTCCAGG
LOC_Os02g06690
OsAffx.2526.1.S1_at--371--4511Chr02:3357190..3357214 (25 bp)
GCCGAGAAGACCAGCTTCCAGGTCG
LOC_Os02g06690
OsAffx.2526.1.S1_at--306--1031Chr02:3357209..3357701 (25 bp)
AGGTCGGCGACCAGCTTTTGTTCGT
LOC_Os02g06690
OsAffx.2526.1.S1_at--398--3952Chr02:3357699..3357723 (25 bp)
CGTGTACCCGAAGGACAAGGACTCG
LOC_Os02g06690
OsAffx.2526.1.S1_at--1070--1671Chr02:3357737..3357761 (25 bp)
AGCCGGCGGACTACAACGCGTGCAA
LOC_Os02g06690
OsAffx.2526.1.S1_at--435--7331Chr02:3357756..3357780 (25 bp)
GTGCAACACGGCGTCGTACGACAGC
LOC_Os02g06690
OsAffx.2526.1.S1_at--852--2471Chr02:3357760..3357784 (25 bp)
AACACGGCGTCGTACGACAGCAAGT
LOC_Os02g06690
OsAffx.2526.1.S1_at--245--9391Chr02:3357769..3357793 (25 bp)
TCGTACGACAGCAAGTTCGCCGACG
LOC_Os02g06690
Target Sequence 
GCGACGCAGTACAAGGTCGGCGGCGACGGCGGATGGGGCGTGCCCGGCGCCGGCGACGAGCCGTACAACACCTGGGCCGA
GAAGACCAGCTTCCAGGTCGGCGACCAGCTTTTGTTCGTGTACCCGAAGGACAAGGACTCGGTGTTGGTGGTGGAGCCGG
CGGACTACAACGCGTGCAACACGGCGTCGTACGACAGCAAGTTCGCCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis