Browse Element(s) Details


OsAffx.25384.1.S1_at

Description tigr:9631.m03507
TID=OsAffx.25384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g473191/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25384.1.S1_at--1055--5171Chr03:20275559..20275583 (25 bp)
GCAAGTCAAAATGGCCGTGTCTCTC
NONE
OsAffx.25384.1.S1_at--92--2451Chr03:20275552..20275576 (25 bp)
AAAATGGCCGTGTCTCTCTTTGTCC
NONE
OsAffx.25384.1.S1_at--586--7452Chr12:2478726..2479032 (25 bp)
GTGTCTCTCTTTGTCCTCGGCTTCT
NONE
OsAffx.25384.1.S1_at--646--9451Chr03:20275527..20275551 (25 bp)
TCGGCTTCTCCCTCTGTGTGTCATC
NONE
OsAffx.25384.1.S1_at--368--9311Chr03:20275519..20275543 (25 bp)
TCCCTCTGTGTGTCATCTCCTGGCT
NONE
OsAffx.25384.1.S1_at--723--9491Chr03:20275504..20275528 (25 bp)
TCTCCTGGCTCCGAATTGTGGGCGG
NONE
OsAffx.25384.1.S1_at--750--1511Chr03:20275403..20275427 (25 bp)
AGCAGCGGTGGACGGTCGGCGCCCA
NONE
OsAffx.25384.1.S1_at--898--8431Chr03:20275327..20275351 (25 bp)
GGCCACGGATGCCAGCGAGGAGGCT
NONE
OsAffx.25384.1.S1_at--110--8631Chr03:20275295..20275319 (25 bp)
TGTGGCGTCACGGACTCACGGAGAG
NONE
OsAffx.25384.1.S1_at--736--8251Chr03:20275190..20275214 (25 bp)
GGCAGCTGGATGCCGTCCACCTCAT
NONE
OsAffx.25384.1.S1_at--75--3753Chr01:27367115..27367135 (21 bp)
CTCTTCTTTGGAGGCCGCCGGTCAG
LOC_Os01g47319
Target Sequence 
GCAAGTCAAAATGGCCGTGTCTCTCTTTGTCCTCGGCTTCTCCCTCTGTGTGTCATCTCCTGGCTCCGAATTGTGGGCGG
CGACGACGAGCGTGGCGCGCAGGTCGAGCAGCGGTGGACGGTCGGCGCCCACGGCATTGCGCGGGGGCGGGTGATGGGCG
GCAGCGTGGGAGGCGCACCGCGGGCCACGGATGCCAGCGAGGAGGCTGTGGGGCTGTGGCGTCACGGACTCACGGAGAGG
GCGCGGGAGGCGGCGGGCTGCGGCGAGGAGGGCGCACCCTCGCCGGTGCATCCTCCAACCTCATTCGCCCCCTCCTGGCG
GCAGCTGGATGCCGTCCACCTCATCCGCCTGTCCTCTTCTTTGGAGGCCGCCGGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis