Browse Element(s) Details


OsAffx.25494.1.S1_at

Description tigr:9631.m04095
TID=OsAffx.25494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4255010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42530OsAffx.32283.1.A1_at9/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.2.S1_x_at6/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.9772.1.S1_at3/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.3.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.27793.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.25352.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42540Os.45976.1.S1_x_at6/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42540Os.45976.1.S1_at3/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42550OsAffx.25494.1.S1_at10/113+23643788..23646025hypothetical protein
LOC_Os03g42569OsAffx.25495.1.S1_at10/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.3490.1.S1_at9/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.4759.1.S1_at3/113+23648652..23659081expressed protein
LOC_Os03g42590OsAffx.3491.1.S1_at11/113+23659482..23660168hypothetical protein
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25494.1.S1_at--913--6411Chr03:23643914..23643938 (25 bp)
GATCTCTCACACTCAACCTTGAGAA
LOC_Os03g42550
OsAffx.25494.1.S1_at--865--1491Chr03:23643952..23643976 (25 bp)
AGCACTTGAGGCACATGAGGGCAGT
LOC_Os03g42550
OsAffx.25494.1.S1_at--588--8271Chr03:23643971..23643995 (25 bp)
GGCAGTGATTCCAGCTGGGAGCTCT
LOC_Os03g42550
OsAffx.25494.1.S1_at--9--3471Chr03:23644895..23644919 (25 bp)
CAGTGGTGTTCCTTTGTACATCTTA
LOC_Os03g42550
OsAffx.25494.1.S1_at--112--10791Chr03:23644908..23644932 (25 bp)
TTGTACATCTTACCGGGTGCACCTG
LOC_Os03g42550
OsAffx.25494.1.S1_at--513--7711NONE
GGGTGCACCTGACATCAGGCATATA
NONE
OsAffx.25494.1.S1_at--529--8071Chr03:23645750..23645774 (25 bp)
GGAGCTACTACACAATACCGTCATG
LOC_Os03g42550
OsAffx.25494.1.S1_at--608--8991Chr03:23645773..23645797 (25 bp)
TGAAGACCTCAACCTGGAGCCAAAT
LOC_Os03g42550
OsAffx.25494.1.S1_at--670--3071Chr03:23645795..23645819 (25 bp)
AATCACAACCCAGCAGCAGGTGGAA
LOC_Os03g42550
OsAffx.25494.1.S1_at--313--3231Chr03:23645911..23645935 (25 bp)
CAAGAGCTGGACTCGAACGGGATCA
LOC_Os03g42550
OsAffx.25494.1.S1_at--151--1251Chr03:23645955..23645979 (25 bp)
AGATTCTGACTCAATATGCCCATCC
LOC_Os03g42550
Target Sequence 
GATCTCTCACACTCAACCTTGAGAAGCCAACGGTGGGGAGCACTTGAGGCACATGAGGGCAGTGATTCCAGCTGGGAGCT
CTGGAGATTCAGTGGTGTTCCTTTGTACATCTTACCGGGTGCACCTGACATCAGGCATATAATTTTACATATTTCACAAA
AGTTTTTGAATAAGACGAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTATTTG
ATAGTGGAGGAGCTCGAAACAGCGGAAATTAACTTGAAGCCAAATCATGCCAATGGCGGTGGTATTTGGGGGTGGTGGGG
TGGAGCTACTACACAATACCGTCATGAAGACCTCAACCTGGAGCCAAATCACAACCCAGCAGCAGGTGGAAGATCCGGCA
TGAAGGAGCTTGCCACCTCACCCTTATGTTCAAAAGGGGAAGGAGGAATGAGAGGTCAAGTTTTTGTTGGATGGGGAGCG
AGCAAGAGCTGGACTCGAACGGGATCAGTGGGAAGGATGAGAATGCAGATTCTGACTCAATATGCCCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis