Browse Element(s) Details


OsAffx.25572.1.S1_at

Description tigr:9631.m04472
TID=OsAffx.25572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative F-box domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4612011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46080Os.41695.5.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.3.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.2.S1_x_at9/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.4.S1_x_at1/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46090Os.22486.1.A1_at5/113+26019165..26022817Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g46100Os.5503.2.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.5503.1.S1_at11/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46100Os.49642.1.S1_x_at7/113+26024686..26027067Cupin family protein, expressed
LOC_Os03g46110OsAffx.13376.1.S1_s_at11/113+26027787..26030746expressed protein
LOC_Os03g46120OsAffx.25572.1.S1_at11/113+26032915..26035358F-box domain containing protein
LOC_Os03g46130NANA3+26037960..26038328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46134OsAffx.16205.1.S1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46134Os.31535.1.A1_at1/113+26043990..26046315hypothetical protein
LOC_Os03g46140OsAffx.25573.1.S1_at11/113+26048006..26049494F-box domain containing protein
LOC_Os03g46150Os.50969.1.S1_x_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50969.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46150Os.50796.1.S1_at11/113+26050181..26051131Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46170NANA3+26057015..26063594retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25572.1.S1_at--269--1231Chr03:26033413..26033437 (25 bp)
AGTTGAACCCAATCGTGCAGGAATT
LOC_Os03g46120
OsAffx.25572.1.S1_at--500--1731Chr03:26033447..26033471 (25 bp)
ACCATCGCGATTGATCACACGTGTT
LOC_Os03g46120
OsAffx.25572.1.S1_at--682--1911Chr03:26033465..26033489 (25 bp)
ACGTGTTTTCTCATCGGCTACAAAG
LOC_Os03g46120
OsAffx.25572.1.S1_at--13--8031Chr03:26033495..26033519 (25 bp)
GGAGGATCGACCATTCGTGAGAGAA
LOC_Os03g46120
OsAffx.25572.1.S1_at--901--7171Chr03:26033538..26033562 (25 bp)
GTCGGCCACCTACAGAAATTATCGG
LOC_Os03g46120
OsAffx.25572.1.S1_at--445--8071Chr03:26033568..26033592 (25 bp)
GGAGAATACCGTGCTGTCTACTGGC
LOC_Os03g46120
OsAffx.25572.1.S1_at--137--5911Chr03:26033596..26033620 (25 bp)
GAGCTCTTTACGTGCATCATTTTAG
LOC_Os03g46120
OsAffx.25572.1.S1_at--596--6091Chr03:26034896..26034920 (25 bp)
GAGTAATCAAACTTCTGCCAGCTAT
LOC_Os03g46120
OsAffx.25572.1.S1_at--1073--5171Chr03:26035106..26035130 (25 bp)
GCAAGTTCATGGACCCTGGATCCTA
LOC_Os03g46120
OsAffx.25572.1.S1_at--520--6351Chr03:26035124..26035148 (25 bp)
GATCCTACGGGATGTCAACTATAAT
LOC_Os03g46120
OsAffx.25572.1.S1_at--996--2231Chr03:26035162..26035186 (25 bp)
AAATTGCGGGATCATGGTTCTATAA
LOC_Os03g46120
Target Sequence 
AGTTGAACCCAATCGTGCAGGAATTAGAATGGCCACCATCGCGATTGATCACACGTGTTTTCTCATCGGCTACAAAGCGA
TGGGAGGATCGACCATTCGTGAGAGAAGGGGAAGCTGCGGGCACCGTCGGCCACCTACAGAAATTATCGGAATATGGAGA
ATACCGTGCTGTCTACTGGCCGGGAGCTCTTTACGTGCATCATTTTAGTTATGTTATAAGGTTATCCATGTCGGATGGAA
AATATCGAGTAATCAAACTTCTGCCAGCTATTGACATACGCTATTATCAAAATTTTTATTTTGGAAAATCAGAGAAAGGG
CAAGTTCATGGACCCTGGATCCTACGGGATGTCAACTATAATCTCTATTGTGAAAAAATTGCGGGATCATGGTTCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis