Browse Element(s) Details


OsAffx.25681.1.S1_at

Description tigr:9631.m05067
TID=OsAffx.25681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to salt-inducible protein gene_id:K22J17.3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5184011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51790Os.11933.1.S1_at11/113+29655593..29657752expressed protein
LOC_Os03g51800OsAffx.20729.1.S1_x_at1/113+29658677..29661637retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22927.1.S1_x_at2/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22927.2.S1_x_at1/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22063.1.S1_at1/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51820NANA3+29667635..29672446pentatricopeptide, putative
LOC_Os03g51830Os.7080.1.S1_at10/113+29674844..29680460DnaJ domain containing protein, expressed
LOC_Os03g51840OsAffx.25681.1.S1_at11/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51840OsAffx.26085.1.S1_x_at1/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51850Os.40855.5.S1_x_at10/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_at9/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_x_at6/113+29686219..29688991hypothetical protein
LOC_Os03g51870Os.16055.1.S1_at11/113+29692492..29695814FHA domain containing protein, expressed
LOC_Os03g51880Os.54926.1.S1_at11/113+29696280..29698422expressed protein
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25681.1.S1_at--598--7671Chr03:29682115..29682139 (25 bp)
GGGTTGACACATTTGCTATCATGGT
LOC_Os03g51840
OsAffx.25681.1.S1_at--328--10171Chr03:29682131..29682155 (25 bp)
TATCATGGTGACTGGCCTCGTTGGC
LOC_Os03g51840
OsAffx.25681.1.S1_at--568--6211Chr03:29682171..29682195 (25 bp)
GAGGCCTGCGGTTATTTCAAGGACA
LOC_Os03g51840
OsAffx.25681.1.S1_at--533--5711Chr03:29682208..29682232 (25 bp)
GACTCTTTGTTGCACCCCAGTATGG
LOC_Os03g51840
OsAffx.25681.1.S1_at--391--8991Chr03:29682238..29682262 (25 bp)
TGAAGGACCTCCTCAATTCATTGGT
LOC_Os03g51840
OsAffx.25681.1.S1_at--253--8351Chr03:29682318..29682342 (25 bp)
GGCTGTGAGCTCAATTTTGGCGCAT
LOC_Os03g51840
OsAffx.25681.1.S1_at--680--10231Chr03:29682333..29682357 (25 bp)
TTTGGCGCATGGACAATCTGGATTC
LOC_Os03g51840
OsAffx.25681.1.S1_at--449--491Chr03:29682348..29682372 (25 bp)
ATCTGGATTCATGCACTGTACGCAA
LOC_Os03g51840
OsAffx.25681.1.S1_at--426--2751Chr03:29682372..29682396 (25 bp)
AAGAAACACGTCAAGGAGGCCTGCA
LOC_Os03g51840
OsAffx.25681.1.S1_at--1117--10851Chr03:29682405..29682429 (25 bp)
TTGGACATGCTTGACGCTGGTCTGA
LOC_Os03g51840
OsAffx.25681.1.S1_at--98--3971Chr03:29682529..29682553 (25 bp)
CGGAGGAGAGACATGTTAGCTTCAA
LOC_Os03g51840
Target Sequence 
GGGTTGACACATTTGCTATCATGGTGACTGGCCTCGTTGGCCAAGGCGTGCTGGTTGAGGCCTGCGGTTATTTCAAGGAC
ATGGTTGGGAGGGGACTCTTTGTTGCACCCCAGTATGGGGTGCTGAAGGACCTCCTCAATTCATTGGTCAGAGATCAGAA
ACTTGAGCTTGCAAAGGATGTTTGGGGATGCATTATGACCAAAGGCTGTGAGCTCAATTTTGGCGCATGGACAATCTGGA
TTCATGCACTGTACGCAAAGAAACACGTCAAGGAGGCCTGCATGTATTGCTTGGACATGCTTGACGCTGGTCTGATGCCG
CAGCCCGACACATTTGCAAAGCTGATGAAGGGACTGAAGAAGCTCTACAACAGGCAGATTGCTGCTGAGATCACTGAGAA
GGTGAGGAAGATGGCGGAGGAGAGACATGTTAGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis