Browse Element(s) Details


OsAffx.25685.1.S1_at

Description tigr:9631.m05086
TID=OsAffx.25685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5202011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51980Os.11143.1.S1_at11/113+29778056..29779054expressed protein
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25685.1.S1_at--708--7291Chr03:29803251..29803275 (25 bp)
GTGCGCGCGCGGGACCTGTACGTGA
LOC_Os03g52020
OsAffx.25685.1.S1_at--521--5831Chr03:29803263..29803287 (25 bp)
GACCTGTACGTGAGCCGGATGGCGG
LOC_Os03g52020
OsAffx.25685.1.S1_at--196--7731Chr03:29803342..29803366 (25 bp)
GGTGCCAGAGCCACGGGTTCTACCG
LOC_Os03g52020
OsAffx.25685.1.S1_at--781--3391Chr03:29803347..29803371 (25 bp)
CAGAGCCACGGGTTCTACCGGTCGG
LOC_Os03g52020
OsAffx.25685.1.S1_at--227--5791Chr03:29803389..29803413 (25 bp)
GACGACGACATACGCGAGCTGATAC
LOC_Os03g52020
OsAffx.25685.1.S1_at--725--5671Chr03:29803395..29803419 (25 bp)
GACATACGCGAGCTGATACGCCTAG
LOC_Os03g52020
OsAffx.25685.1.S1_at--1064--311Chr03:29803398..29803422 (25 bp)
ATACGCGAGCTGATACGCCTAGCCT
LOC_Os03g52020
OsAffx.25685.1.S1_at--965--1811Chr03:29803400..29803424 (25 bp)
ACGCGAGCTGATACGCCTAGCCTCG
LOC_Os03g52020
OsAffx.25685.1.S1_at--687--4711Chr03:29803541..29803565 (25 bp)
GCTGGCCATGGCTCCGAAGAGCAAG
LOC_Os03g52020
OsAffx.25685.1.S1_at--1162--2771Chr03:29803557..29803581 (25 bp)
AAGAGCAAGAGCTGCACCGTCGGGC
LOC_Os03g52020
OsAffx.25685.1.S1_at--214--1491Chr03:29803560..29803584 (25 bp)
AGCAAGAGCTGCACCGTCGGGCCAA
LOC_Os03g52020
Target Sequence 
GTGCGCGCGCGGGACCTGTACGTGAGCCGGATGGCGGCGTGCGCGGGCGGCGGCGGGAGAGGCGCCCCGGTGGGGCTGGT
CGCGGTGCCGCGGTGCCAGAGCCACGGGTTCTACCGGTCGGCGGCGGGAGGCAGCACCGACGACGACATACGCGAGCTGA
TACGCCTAGCCTCGCGCGCCGGTGGGCCGCCGAGGCCTCCCGGCGTCGGGCCGCGGAGCCAGAGCGTGGCCATCGGGAGG
ATCGACGAGGACGAGCCGTGCGAGTTCGGCCTCGACGCCGAGGCCAGGGCGCTGGCCATGGCTCCGAAGAGCAAGAGCTG
CACCGTCGGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis