Browse Element(s) Details


OsAffx.25707.1.S1_at

Description tigr:9631.m05296
TID=OsAffx.25707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=kinesin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5392011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25707.1.S1_at--639--1271Chr03:30869123..30869147 (25 bp)
AGATCAGGGCATGTGAGGAGTCCTT
LOC_Os03g53920
OsAffx.25707.1.S1_at--126--8691Chr03:30869134..30869158 (25 bp)
TGTGAGGAGTCCTTGCAGCATCAAA
LOC_Os03g53920
OsAffx.25707.1.S1_at--294--6171Chr03:30869137..30869161 (25 bp)
GAGGAGTCCTTGCAGCATCAAACAA
LOC_Os03g53920
OsAffx.25707.1.S1_at--753--5051Chr03:30869148..30869172 (25 bp)
GCAGCATCAAACAAGGTCCCTGGAT
LOC_Os03g53920
OsAffx.25707.1.S1_at--988--1031Chr03:30869161..30869185 (25 bp)
AGGTCCCTGGATGACATGAACTCGA
LOC_Os03g53920
OsAffx.25707.1.S1_at--425--7991Chr03:30869169..30869193 (25 bp)
GGATGACATGAACTCGAAGCTAAAT
LOC_Os03g53920
OsAffx.25707.1.S1_at--107--2691Chr03:30869185..30869209 (25 bp)
AAGCTAAATCAAGCGATGCGTGATC
LOC_Os03g53920
OsAffx.25707.1.S1_at--952--1531Chr03:30869216..30869240 (25 bp)
AGCATCTGCGAGACAGAACCCCTTG
LOC_Os03g53920
OsAffx.25707.1.S1_at--345--3831Chr03:30869221..30869245 (25 bp)
CTGCGAGACAGAACCCCTTGCGATT
LOC_Os03g53920
OsAffx.25707.1.S1_at--1054--10491Chr03:30869455..30869479 (25 bp)
TTCACCACAACACAAGGGATCAGGC
LOC_Os03g53920
OsAffx.25707.1.S1_at--105--2211Chr03:30869461..30869485 (25 bp)
ACAACACAAGGGATCAGGCGTCTCT
LOC_Os03g53920
Target Sequence 
AGATCAGGGCATGTGAGGAGTCCTTGCAGCATCAAACAAGGTCCCTGGATGACATGAACTCGAAGCTAAATCAAGCGATG
CGTGATCTGGGTGAGCATCTGCGAGACAGAACCCCTTGCGATTTGGATGCATCCATGTTGCATGTTTCTGACAAGGTTAA
GGGGGATCTTGATGCAATGGCGCTTCATGTTGCTGAAGCTGTGCAGCTCTTGCTTGTCCAGGGTGAGAACCAAACAAATC
CGTGAGCCTGCTCAACTAGAACCAGCTTTCCTTCACTGATGCAATAACCGACAGGCTAGTCTGTCCAAGCCTCATCTGTG
CACATCCTTGTTTTCACCACAACACAAGGGATCAGGCGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis