Browse Element(s) Details


OsAffx.25709.1.S1_at

Description tigr:9631.m05303
TID=OsAffx.25709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54030NANA3+30923857..30928424transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g54040Os.20521.1.S1_at11/113+30931465..3093502750S ribosomal protein L6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25709.1.S1_at--11--6931Chr03:30909209..30909233 (25 bp)
GTAGTGCACTTGCTGGACTCGTCAG
LOC_Os03g53990
OsAffx.25709.1.S1_at--765--5711Chr03:30909224..30909248 (25 bp)
GACTCGTCAGTCATGTATGGTGCAA
LOC_Os03g53990
OsAffx.25709.1.S1_at--769--10111Chr03:30909239..30909263 (25 bp)
TATGGTGCAACCACATCAGCCTTAT
LOC_Os03g53990
OsAffx.25709.1.S1_at--700--6311Chr03:30909455..30909479 (25 bp)
GATGACGGCCACATTGCATGGATCT
LOC_Os03g53990
OsAffx.25709.1.S1_at--1133--6031Chr03:30909509..30909533 (25 bp)
GAGATCTTTGAACTGCCACTCTGAA
LOC_Os03g53990
OsAffx.25709.1.S1_at--838--7331Chr03:30909543..30909567 (25 bp)
GTGCAGTTGGTTTCACGGCCACAAG
LOC_Os03g53990
OsAffx.25709.1.S1_at--250--2231Chr03:30909563..30909587 (25 bp)
ACAAGGTGCCTATCTGATGTCCCTG
LOC_Os03g53990
OsAffx.25709.1.S1_at--142--7251Chr03:30909581..30909605 (25 bp)
GTCCCTGTCCTTCTGTACTGATGAT
LOC_Os03g53990
OsAffx.25709.1.S1_at--961--7851Chr03:30909668..30909692 (25 bp)
GGTAGGTACCTATCATATGCTCTGT
LOC_Os03g53990
OsAffx.25709.1.S1_at--994--10131Chr03:30909683..30909707 (25 bp)
TATGCTCTGTTCCAGTTTCTATCAC
LOC_Os03g53990
OsAffx.25709.1.S1_at--463--2011Chr03:30909706..30909730 (25 bp)
ACTCTGCTTCTGTCAATGGTGTGTT
LOC_Os03g53990
Target Sequence 
GTAGTGCACTTGCTGGACTCGTCAGTCATGTATGGTGCAACCACATCAGCCTTATCATTGGGGGCATTAGGCGCAGCGGC
AATGTATGGAAAAGCGAGGAATAACGGCAGCCAGAGTGGCACAAATGACATGGAGGATGATATGAAAACGGCCAGACAGT
GGCTTGTTGATTTCTTGAAAGGTCAAGGGATTTTGACAGGGATGGACATAGCACAGAGATTTGGTCTGTGGCGCGTTAGG
TACAGAGATGACGGCCACATTGCATGGATCTGCAGGAAGCACATTGTTGCGAGAGCAGACGAGATCTTTGAACTGCCACT
CTGAACCATCCAGGGTGCAGTTGGTTTCACGGCCACAAGGTGCCTATCTGATGTCCCTGTCCTTCTGTACTGATGATGAC
AACTGACGAGCTTGCAATTGTAAGGGATGGTGCCATTGCTGATTACAAGGATCGCATATGGTAGGTACCTATCATATGCT
CTGTTCCAGTTTCTATCACTCTGCTTCTGTCAATGGTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis