Browse Element(s) Details


OsAffx.25799.1.S1_at

Description tigr:9631.m06204
TID=OsAffx.25799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6277011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25799.1.S1_at--969--5751Chr03:35458560..35458584 (25 bp)
GACGTGTTCCGCAATCCGCACGGCG
LOC_Os03g62770
OsAffx.25799.1.S1_at--1026--9551Chr03:35458511..35458535 (25 bp)
TCTTCCCCGGCGAGAAGTTCTACCT
LOC_Os03g62770
OsAffx.25799.1.S1_at--242--4051Chr03:35458501..35458525 (25 bp)
CGAGAAGTTCTACCTCCTCCCGGAG
LOC_Os03g62770
OsAffx.25799.1.S1_at--692--1651Chr03:35458478..35458502 (25 bp)
AGCGCACCATCGAGAGGCTCCAGCG
LOC_Os03g62770
OsAffx.25799.1.S1_at--632--511Chr03:35458470..35458494 (25 bp)
ATCGAGAGGCTCCAGCGCCAAATCC
LOC_Os03g62770
OsAffx.25799.1.S1_at--79--4391Chr03:35458454..35458478 (25 bp)
GCCAAATCCCCGAGAGCTCCGTCGG
LOC_Os03g62770
OsAffx.25799.1.S1_at--860--8011Chr03:35458393..35458417 (25 bp)
GGAGGACACGCAGGATTACAGCAGC
LOC_Os03g62770
OsAffx.25799.1.S1_at--646--2171Chr03:35458388..35458412 (25 bp)
ACACGCAGGATTACAGCAGCGGCGC
LOC_Os03g62770
OsAffx.25799.1.S1_at--684--7772Chr10:8204712..8204822 (25 bp)
GGTGCTGCGCGAGGGAGTACTTCGA
NONE
OsAffx.25799.1.S1_at--163--8011Chr03:35458261..35458285 (25 bp)
GGAGCGGTGGGAGGAATGCCAGTTC
LOC_Os03g62770
OsAffx.25799.1.S1_at--700--1891Chr03:35458071..35458095 (25 bp)
ACGTGGGAACCCAGCCTGCCGTCGG
LOC_Os03g62770
Target Sequence 
GACGTGTTCCGCAATCCGCACGGCGCCCGCGCCCGCCCGCTCCAGCCGCTCTTCCCCGGCGAGAAGTTCTACCTCCTCCC
GGAGCGCACCATCGAGAGGCTCCAGCGCCAAATCCCCGAGAGCTCCGTCGGCGCCTTCGACAACGCCGACGAGGAGGAGG
AGGAGGAGGAGGACACGCAGGATTACAGCAGCGGCGCGGCATCGTCGTCGTCGGAGGAGGAGGCGGCGTGCGACGACGAC
GACGGCGACGAGTGCGCCGCGCGGAGGTGGTGCTGCGCGAGGGAGTACTTCGAGGCGAAGGAGCGGTGGGAGGAATGCCA
GTTCAAGAAGATGGTGGCGCGGGGGCTCGCCGTCGAGCAGAACACCGAGAAGGAGACGGCGATGAAGAAGAAGAAGAAGA
ATGGGAGGAGGAGGAAGAAGAAGAGGAACTCCGCCGCCGTGCCGTCGACGGGGTGCAGGACGTCGAGAGCGCCGGCGACG
ACGAGGAGGACGTGGGAACCCAGCCTGCCGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis