Browse Element(s) Details


OsAffx.25965.1.S1_at

Description tigr:9632.m00947
TID=OsAffx.25965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1074011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10680Os.13480.1.S1_at10/114+5782079..5791064Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g10690Os.57546.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed
LOC_Os04g10690Os.46784.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed
LOC_Os04g10700NANA4+5797240..5801426retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g10709NANA4+5802704..5802950NA
LOC_Os04g10720NANA4+5806482..5807662retrotransposon protein, putative, unclassified
LOC_Os04g10724Os.52702.1.S1_at3/114+5808650..5809720hypothetical protein
LOC_Os04g10730Os.40360.1.S1_x_at1/114+5810725..5813044hypothetical protein
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25965.1.S1_at--723--10871Chr04:5815847..5815871 (25 bp)
TTGGCACTACCTGGAGCAAGCAATG
LOC_Os04g10740
OsAffx.25965.1.S1_at--1128--391Chr04:5815822..5815846 (25 bp)
ATCAGACTAGGGTTCTCTCATCGGT
LOC_Os04g10740
OsAffx.25965.1.S1_at--275--4971Chr04:5815670..5815800 (25 bp)
GCATAACCGTGCAGATGGCCTTTCT
LOC_Os04g10740
OsAffx.25965.1.S1_at--811--8451Chr04:5815655..5815679 (25 bp)
TGGCCTTTCTCTTCTGTTGGATGAA
LOC_Os04g10740
OsAffx.25965.1.S1_at--352--391Chr04:5815612..5815636 (25 bp)
ATCACTCCTGTTCGCATTTGTAGAC
LOC_Os04g10740
OsAffx.25965.1.S1_at--887--10251Chr04:5815596..5815620 (25 bp)
TTTGTAGACAGGCTCCAGGCATCTC
LOC_Os04g10740
OsAffx.25965.1.S1_at--1020--10571Chr04:5815544..5815568 (25 bp)
TTCTCTTCTTTAGTGCCGATAACCA
LOC_Os04g10740
OsAffx.25965.1.S1_at--670--1771Chr04:5815473..5815497 (25 bp)
ACCGGCGAAGTGCTCTGTCATGTTC
LOC_Os04g10740
OsAffx.25965.1.S1_at--298--7131Chr04:5815457..5815481 (25 bp)
GTCATGTTCAGTCCTGCTATCCAAA
LOC_Os04g10740
OsAffx.25965.1.S1_at--1133--4711Chr04:5815236..5815260 (25 bp)
GCTGTTATTCAAGCAATTCCCGTTT
LOC_Os04g10740
OsAffx.25965.1.S1_at--428--31Chr04:5815211..5815235 (25 bp)
ATGTTATGGGTCTCTTCAAACCGCC
LOC_Os04g10740
Target Sequence 
TTGGCACTACCTGGAGCAAGCAATGATCAGACTAGGGTTCTCTCATCGGTGGGTTGGCTGGATTATGGAGTGCATAACCG
TGCAGATGGCCTTTCTCTTCTGTTGGATGAAAAGGTTCAGAGTGGTGACATCACTCCTGTTCGCATTTGTAGACAGGCTC
CAGGCATCTCGCATCTGCTGTTTTCTTGATGATACACTTCTCTTCTTTAGTGCCGATAACCATCAGGCAGAGGTGTTGCA
GGAGGTTCTAGATAACTATGCCCAGAGCACCGGCGAAGTGCTCTGTCATGTTCAGTCCTGCTATCCAAATTCGGTTTGCA
ATATGATCAGAAGCACCTTGCAAATTACACAAGCTAGTTTTGACGATAAGTATCAGGGGTTCCCAATGCCGGAAGGAAGG
CTGTACAAAGGGAAATTCCAAACCATGCAGAGCAGAATCTTGAAACGTCTGGTTCAGTGGGGTGAAAATTTCCTATCGAT
AGGGGGTAAGGAGGTGCTAATTAAAGCTGTTATTCAAGCAATTCCCGTTTATGTTATGGGTCTCTTCAAACCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis