Browse Element(s) Details


OsAffx.26050.13.S1_x_at

Description gb:NM_197448.1
DB_XREF= gi:37536255
TID=OsAffx.26050.13
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) PSII G protein 5-partial (OSJNBb0005J14.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g580309/11NAD, putative, expressed
LOC_Os06g220108/11NAD, putative
LOC_Os12g194205/11NAD, putative
LOC_Os10g382105/11NAD, putative
LOC_Os10g212605/11NAD, putative
LOC_Os02g246004/11NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os03g438002/11DIRP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57990OsAffx.11641.1.S1_s_at11/111+33862980..33863697hypothetical protein
LOC_Os01g57990OsAffx.11641.1.S1_at9/111+33862980..33863697hypothetical protein
LOC_Os01g58000OsAffx.30475.9.S1_s_at11/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58000OsAffx.30475.1.S1_s_at5/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0005739cellular_componentmitochondrion
GO:0009512cellular_componentcytochrome b6f complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26050.13.S1_x_at--1061--9716Chr10:20134936..20134960 (25 bp)
TCAAGACTCTCTAGTTTATGGCCCC
NONE
OsAffx.26050.13.S1_x_at--407--10096Chr12:13343776..13343795 (20 bp)
TATGGCCCCTTCTATATGGTACCAG
NONE
OsAffx.26050.13.S1_x_at--99--136Chr10:20135001..20135025 (25 bp)
ATTAATAGGCTCACGATTCGACTTT
NONE
OsAffx.26050.13.S1_x_at--323--7839Chr10:20135040..20135064 (25 bp)
GGTACCAAGATCAAGTCCTAGGCAA
NONE
OsAffx.26050.13.S1_x_at--954--8216Chr10:20135060..20135084 (25 bp)
GGCAAGCGGACCTAATTTTAACAGC
NONE
OsAffx.26050.13.S1_x_at--576--675Chr10:20135098..20135122 (25 bp)
ATGAAAATGGCTCCCTCTTTAGTGA
NONE
OsAffx.26050.13.S1_x_at--219--9937Chr10:20135199..20135223 (25 bp)
TACGGATTCCTATAGTACTGTTCGG
LOC_Os10g38210
OsAffx.26050.13.S1_x_at--884--9736Chr10:20135237..20135261 (25 bp)
TAATTCCTGTGGACGTCTACTTGCC
LOC_Os10g38210
OsAffx.26050.13.S1_x_at--862--2277Chr10:20135364..20135388 (25 bp)
AAATCGATGTTTTACTACCAGCCAC
LOC_Os10g38210
OsAffx.26050.13.S1_x_at--766--2219Chr12:13385647..13385671 (25 bp)
ACAAGCTTTATGTTCGGCGCAGTAC
NONE
OsAffx.26050.13.S1_x_at--738--10718Chr12:13385697..13385721 (25 bp)
TTGCTCTATCAATCACCATCTACTT
NONE
Target Sequence 
TCAAGACTCTCTAGTTTATGGCCCCTTCTATATGGTACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATAGGCTCACG
ATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACAGTAA
CAATGAAAATGGCTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGT
ACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTA
CTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATGCCCTAACAAAACTTCGTAAGAAGATATCGCGAGAAATAG
TTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAAT
ACTGGAACTTATGAGCAAGAATTGCTCTATCAATCACCATCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26050.13.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis