Browse Element(s) Details


OsAffx.26050.3.A1_at

Description gb:AK069240.1
DB_XREF= gi:32979264
TID=OsAffx.26050.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010F18, full insert sequence.
FL= gb:AK069240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2441011/11kinesin heavy chain isolog, putative, expressed
LOC_Os04g177009/11kinesin heavy chain isolog, putative, expressed
LOC_Os12g235701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24370NANA4+13948063..13955445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24380NANA4+13956780..13957436retrotransposon, putative, centromere-specific
LOC_Os04g24390NANA4+13959475..13962175retrotransposon protein, putative, unclassified
LOC_Os04g24400NANA4+13962813..13963322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24410Os.35543.1.S1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.26050.3.A1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32229.1.S1_x_at9/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.28576.1.S1_s_at4/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32306.1.S1_x_at1/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24414Os.38273.2.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.15576.1.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.38273.2.S1_x_at11/114+13979041..13981278expressed protein
LOC_Os04g24420Os.38273.1.S1_at11/114+13980253..13981553expressed protein
LOC_Os04g24430Os.48521.1.S1_at8/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24430Os.46781.1.S1_at2/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26050.3.A1_at--583--10414Chr09:4709968..4709992 (25 bp)
TTATCTTCTTTACAACCTCCAAACA
NONE
OsAffx.26050.3.A1_at--473--2773Chr04:9673660..9673684 (25 bp)
AAGAGAGCTCCATCGGGTTGAAGCC
LOC_Os04g17700
OsAffx.26050.3.A1_at--263--373Chr12:13343441..13343460 (20 bp)
ATCAAGATCTTCTACCTTTGCGGAG
LOC_Os12g23570
OsAffx.26050.3.A1_at--716--2053Chr04:9673736..9673760 (25 bp)
ACTTCTATTTACTTGATTTGCTGGG
LOC_Os04g17700
OsAffx.26050.3.A1_at--494--9931Chr04:13969447..13969471 (25 bp)
TACCACTAAGTAAGGCCGGGCAAGT
LOC_Os04g24410
OsAffx.26050.3.A1_at--318--8233Chr04:9673792..9673816 (25 bp)
GGCAAGTGCAAGTCCCGATAACGGG
LOC_Os04g17700
OsAffx.26050.3.A1_at--638--2573Chr04:9673811..9673835 (25 bp)
AACGGGAAGAAATGCCTACCAAGTG
LOC_Os04g17700
OsAffx.26050.3.A1_at--813--2452Chr04:9673874..9673898 (25 bp)
AACAATAACTCAGGGTAGCCGATAT
LOC_Os04g17700
OsAffx.26050.3.A1_at--5--632Chr04:9673977..9674001 (25 bp)
ATGCTACAGTTATTCCCATCCATTC
LOC_Os04g17700
OsAffx.26050.3.A1_at--696--4312Chr04:9673992..9674016 (25 bp)
CCATCCATTCTTTTAGTTGCCAACT
LOC_Os04g17700
OsAffx.26050.3.A1_at--373--6692Chr04:9674007..9674031 (25 bp)
GTTGCCAACTAGACATTGTTATCTT
LOC_Os04g17700
Target Sequence 
TTATCTTCTTTACAACCTCCAAACAAACAGAAAGACTAACGCCGAAAGATATGTTTTGAAGAGAGCTCCATCGGGTTGAA
GCCGAATTGCAGAGAATCAAGATCTTCTACCTTTGCGGAGGGACTTGAATTATTACTTCTATTTACTTGATTTGCTGGGG
AAGAAAATCATTAAAATACCACTAAGTAAGGCCGGGCAAGTGCAAGTCCCGATAACGGGAAGAAATGCCTACCAAGTGAA
AGAAAGAGATCGCAATGGTCTAAGATATAGTCAGTGAACAATAACTCAGGGTAGCCGATATACTGAATAGTAGTGGTATT
TTTTCTAATTGTCATATTTGCAGTGGCATAGATCCAATTAACCCTTACTTCTTTCGTTGATGCTACAGTTATTCCCATCC
ATTCTTTTAGTTGCCAACTAGACATTGTTATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26050.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis