Browse Element(s) Details


OsAffx.26077.1.S1_at

Description tigr:9632.m01842
TID=OsAffx.26077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2018011/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os09g034908/11GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g115705/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20150OsAffx.13882.1.S1_at9/114+11198453..11200211hypothetical protein
LOC_Os04g20150Os.54523.1.S1_at2/114+11198453..11200211hypothetical protein
LOC_Os04g20150OsAffx.22629.1.S1_at1/114+11198453..11200211hypothetical protein
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26077.1.S1_at--261--4173Chr09:1720450..1720474 (25 bp)
CGCCTACTTCAAGGTTCTGCTTGGA
LOC_Os09g03490
OsAffx.26077.1.S1_at--781--9112Chr09:1720513..1720537 (25 bp)
TGCTGCTGCTTTATGGTTGCTTTAA
LOC_Os09g03490
OsAffx.26077.1.S1_at--454--7912Chr09:1720527..1720798 (25 bp)
GGTTGCTTTAACTCTGACGACAATA
LOC_Os09g03490
OsAffx.26077.1.S1_at--446--7111Chr04:11226047..11226071 (25 bp)
GTCAGCCAGGAAATTGCTTGTGCTC
LOC_Os04g20180
OsAffx.26077.1.S1_at--770--4931Chr04:11226062..11226086 (25 bp)
GCTTGTGCTCTCTGTTCATTGAATT
LOC_Os04g20180
OsAffx.26077.1.S1_at--503--6072Chr09:1720882..1720906 (25 bp)
GAGTTCATAATGCACCAGTACAGTA
LOC_Os09g03490
OsAffx.26077.1.S1_at--434--1711Chr04:11226138..11226395 (25 bp)
ACCAGTACAGTACAGCGGACATGTA
LOC_Os04g20180
OsAffx.26077.1.S1_at--449--2513Chr09:1721299..1721323 (25 bp)
AACATCTGCATTATGGTATGGATCT
LOC_Os09g03490
OsAffx.26077.1.S1_at--138--6933Chr09:1721314..1721338 (25 bp)
GTATGGATCTATTTCAAGTGACCTT
LOC_Os09g03490
OsAffx.26077.1.S1_at--1083--2813Chr09:1721329..1721353 (25 bp)
AAGTGACCTTATACCTAAACTTGAT
LOC_Os09g03490
OsAffx.26077.1.S1_at--573--2393Chr09:1721345..1721369 (25 bp)
AAACTTGATGTATGGATGGGCTTAA
LOC_Os09g03490
Target Sequence 
CGCCTACTTCAAGGTTCTGCTTGGATTGATGCTGCTGCTTTATGGTTGCTTTAACTCTGACGACAATAAAGGGGTCAGCC
AGGAAATTGCTTGTGCTCTCTGTTCATTGAATTACTCCGATAAAAATTACTTTGCTCAAGAATTTAAAACTGAGTTCATA
ATGCACCAGTACAGTACAGCGGACATGTATGGAGAAGATGACCCTTCAAAACTACCTGAAAGAACCAATGAGGCTACTGG
CACTTATGCACAGGCATGCCTGACAGTTGCTAAAGAATTGAACCATCCAGTCATAGACATCTGGACAAAGATGCAGCAAT
TTCCTGACTGGCAAACATCTGCATTATGGTATGGATCTATTTCAAGTGACCTTATACCTAAACTTGATGTATGGATGGGC
TTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis