Browse Element(s) Details


OsAffx.2609.1.S1_x_at

Description gb:NM_191829.1
DB_XREF= gi:34910741
GEN=P0022F10.17
TID=OsAffx.2609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0022F10.17 (P0022F10.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g390104/11lactose permease, putative, expressed
LOC_Os01g401204/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed
LOC_Os07g39030OsAffx.5573.1.S1_at11/117+23399311..23400153hypothetical protein
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2609.1.S1_x_at--275--98522Chr12:23622569..23622592 (24 bp)
TACACCACCAATCCGCACAAGAAGG
NONE
OsAffx.2609.1.S1_x_at--926--52916Chr12:23622588..23622612 (25 bp)
GAAGGATCGTCGTCGGTCAACAACA
NONE
OsAffx.2609.1.S1_x_at--411--97117Chr12:23622604..23622628 (25 bp)
TCAACAACATTGTCCCTTCAGCGAT
NONE
OsAffx.2609.1.S1_x_at--1038--86912Chr12:23622614..23622638 (25 bp)
TGTCCCTTCAGCGATTCGGCCAAGG
NONE
OsAffx.2609.1.S1_x_at--426--2112Chr03:32171225..32171245 (21 bp)
ACAGTTGTTCCCACCGTCGACGGCG
NONE
OsAffx.2609.1.S1_x_at--381--8933Chr06:17891298..17891360 (25 bp)
TGACGACGACGCACCGTACCATCGT
NONE
OsAffx.2609.1.S1_x_at--299--697Chr12:21969435..21969457 (23 bp)
ATGACGCCAGCCGTCCAGATCCGGC
NONE
OsAffx.2609.1.S1_x_at--322--7738Chr12:23622946..23622970 (25 bp)
GGTGGCGCGGATCGGAGGTGCAGCG
NONE
OsAffx.2609.1.S1_x_at--5--3991Chr01:30539980..30540004 (25 bp)
CGGGTCGCCGGCATCATGGAGAAAG
NONE
OsAffx.2609.1.S1_x_at--673--9331Chr01:30539984..30540008 (25 bp)
TCGCCGGCATCATGGAGAAAGGCGT
NONE
OsAffx.2609.1.S1_x_at--503--411Chr01:30539992..30540016 (25 bp)
ATCATGGAGAAAGGCGTCACGGGCA
NONE
Target Sequence 
TACACCACCAATCCGCACAAGAAGGATCGTCGTCGGTCAACAACATTGTCCCTTCAGCGATTCGGCCAAGGCCACCGCCC
ACAGTTGTTCCCACCGTCGACGGCGTGCCCGCACCTGGACTCCTCCTTCCCCGCCGCCAGACCCCTTCCCAGCCTCCACA
TACCGCCGCTGACGACGACGCACCGTACCATCGTCGACAGCCACCACCGCCACTATCACAGCCACCACCGTCGCCAGCCG
CCACCGTCAGCCACCATCGCCACCGCCACCGCCACCGCCACGGACACCCCCGTCCAGCCACCACCGTCCAGCCGCCACCA
TGACGCCAGCCGTCCAGATCCGGCCGGGGTGGCGCGGATCGGAGGTGCAGCGCGAAGCGCGGGTCGCCGGCATCATGGAG
AAAGGCGTCACGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2609.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis