Browse Element(s) Details


OsAffx.26148.1.S1_x_at

Description tigr:9632.m02412
TID=OsAffx.26148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2572011/11hypothetical protein
LOC_Os02g261905/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g205805/11hypothetical protein
LOC_Os01g342905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144805/11hypothetical protein
LOC_Os10g239804/11hypothetical protein
LOC_Os06g315203/11hypothetical protein
LOC_Os09g231901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g153001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25670OsAffx.13974.1.S1_at11/114+14862328..14863421hypothetical protein
LOC_Os04g25670OsAffx.29642.1.S1_at1/114+14862328..14863421hypothetical protein
LOC_Os04g25680OsAffx.28220.1.S1_s_at8/114+14866544..14874150Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g25680Os.44572.1.S1_x_at7/114+14866544..14874150Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g25690OsAffx.26147.2.S1_x_at11/114+14874503..14875928transposon protein, putative, unclassified
LOC_Os04g25700Os.26886.6.S1_s_at9/114+14881274..14882507hypothetical protein
LOC_Os04g25700Os.26886.2.S1_s_at8/114+14881274..14882507hypothetical protein
LOC_Os04g25700OsAffx.16467.1.S1_at6/114+14881274..14882507hypothetical protein
LOC_Os04g25710NANA4+14882706..14884523transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25720OsAffx.26148.1.S1_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25720OsAffx.26148.1.S1_x_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25730Os.26886.3.S1_x_at6/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25730Os.26886.1.S1_x_at4/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25740Os.49625.1.S1_at11/114+14902507..14904947expressed protein
LOC_Os04g25740Os.49625.1.S2_at11/114+14902507..14904947expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26148.1.S1_x_at--960--3931Chr04:14885136..14885160 (25 bp)
CGGCGGCCTCAGACTCAGCGAGGGA
LOC_Os04g25720
OsAffx.26148.1.S1_x_at--824--7371Chr04:14885561..14885585 (25 bp)
GTGACGGGCTCCATCACGGAGATTG
LOC_Os04g25720
OsAffx.26148.1.S1_x_at--733--8931Chr04:14885562..14885586 (25 bp)
TGACGGGCTCCATCACGGAGATTGA
LOC_Os04g25720
OsAffx.26148.1.S1_x_at--259--3991Chr04:14885565..14885589 (25 bp)
CGGGCTCCATCACGGAGATTGAGAT
LOC_Os04g25720
OsAffx.26148.1.S1_x_at--859--12563Chr12:25099327..25099350 (24 bp)
AGATTGAGATGACATTCAGGCCCGT
NONE
OsAffx.26148.1.S1_x_at--818--568Chr12:25099328..25099352 (25 bp)
ATTGAGATGACATTCAGGCCCGTCA
NONE
OsAffx.26148.1.S1_x_at--895--88960Chr12:25099330..25099354 (25 bp)
TGAGATGACATTCAGGCCCGTCACG
NONE
OsAffx.26148.1.S1_x_at--1063--12958Chr12:25099332..25099356 (25 bp)
AGATGACATTCAGGCCCGTCACGGA
NONE
OsAffx.26148.1.S1_x_at--328--42369Chr12:1741765..1741882 (25 bp)
CCGTCACGGATGACTCATCTATGAT
NONE
OsAffx.26148.1.S1_x_at--997--3533Chr09:9746281..9746453 (25 bp)
CATCTATGATGGGCCCTAAGATAAT
NONE
OsAffx.26148.1.S1_x_at--538--5494Chr04:14885655..14885679 (25 bp)
GACTAATCTCTATCGGGCTTAAACT
LOC_Os04g25720
Target Sequence 
CGGCGGCCTCAGACTCAGCGAGGGAGGAGTCGGCGAAGGGCGGCGGTGCCGGGCTCGGTGGAGGGCGTCGCCGGGGGCCC
GTCACAGATGACTCATCGGTGACGGGCTCCATCACGGAGATTGAGATGACATTCAGGCCCGTCACGGATGACTCATCTAT
GATGGGCCCTAAGATAATGCCCGATAGAGATAGACTAATCTCTATCGGGCTTAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis