Browse Element(s) Details


OsAffx.26159.1.S1_at

Description tigr:9632.m02460
TID=OsAffx.26159.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2620010/11hypothetical protein
LOC_Os04g2518010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26140Os.40360.1.S1_at9/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.2.S1_x_at9/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40360.1.S1_x_at6/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.4.S1_x_at3/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.5.S1_x_at3/114+15214829..15223766hypothetical protein
LOC_Os04g26140Os.40855.4.S1_at1/114+15214829..15223766hypothetical protein
LOC_Os04g26150OsAffx.3900.1.S1_at11/114+15226251..15227293hypothetical protein
LOC_Os04g26160OsAffx.26158.1.S1_x_at8/114+15231811..15234257hypothetical protein
LOC_Os04g26160OsAffx.26158.2.S1_x_at3/114+15231811..15234257hypothetical protein
LOC_Os04g26160OsAffx.26158.2.S1_at1/114+15231811..15234257hypothetical protein
LOC_Os04g26170OsAffx.26144.1.S1_x_at7/114+15234587..15236391Zinc knuckle family protein
LOC_Os04g26180Os.45902.1.A1_x_at2/114+15239011..15240476hypothetical protein
LOC_Os04g26180Os.10263.1.S1_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26180OsAffx.21755.1.S1_x_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26180OsAffx.727.1.S1_x_at1/114+15239011..15240476hypothetical protein
LOC_Os04g26190Os.9665.1.S1_at6/114+15244356..15245046Pollen allergen family protein
LOC_Os04g26200OsAffx.26159.1.S1_at10/114+15247619..15248553hypothetical protein
LOC_Os04g26210OsAffx.22711.4.A1_x_at1/114+15255500..15256105transposon protein, putative, unclassified
LOC_Os04g26220Os.25407.1.S1_at2/114+15259580..15260027Pollen allergen family protein, expressed
LOC_Os04g26230Os.12319.1.S1_x_at11/114+15267834..15268516Pollen allergen family protein, expressed
LOC_Os04g26240Os.48553.2.S1_x_at11/114+15273087..15275023F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26159.1.S1_at--83--5732Chr04:14530997..14531077 (25 bp)
GACCCGCGGACGGATCCGGTTTGAT
LOC_Os04g25180
OsAffx.26159.1.S1_at--666--5731NONE
GACGGATCCGGTTTGATTTAAGAAT
NONE
OsAffx.26159.1.S1_at--995--6352Chr04:14531545..14531564 (20 bp)
GATCCGGTTTGATTTAAGAATGGAA
LOC_Os04g25180
OsAffx.26159.1.S1_at--412--12Chr04:14531556..14531777 (25 bp)
AGAATGGAAATTCTGGAATGGTCCA
LOC_Os04g25180
OsAffx.26159.1.S1_at--912--8512Chr04:14531767..14531790 (24 bp)
TGGAATGGTCCAGCGTGAATCCTGA
LOC_Os04g25180
OsAffx.26159.1.S1_at--791--2972Chr04:14531769..14531793 (25 bp)
AATGGTCCAGCGTGAATCCTGAAAC
LOC_Os04g25180
OsAffx.26159.1.S1_at--693--7792Chr04:14531772..14531796 (25 bp)
GGTCCAGCGTGAATCCTGAAACAAC
LOC_Os04g25180
OsAffx.26159.1.S1_at--303--4652Chr04:14531778..14531802 (25 bp)
GCGTGAATCCTGAAACAACACCAAA
LOC_Os04g25180
OsAffx.26159.1.S1_at--736--5532Chr04:14531789..14531813 (25 bp)
GAAACAACACCAAACTCACTGCGAA
LOC_Os04g25180
OsAffx.26159.1.S1_at--168--2412Chr04:14531794..14531818 (25 bp)
AACACCAAACTCACTGCGAACAAGT
LOC_Os04g25180
OsAffx.26159.1.S1_at--237--9152Chr04:14531808..14531832 (25 bp)
TGCGAACAAGTGAAGAATGCAACTT
LOC_Os04g25180
Target Sequence 
GACCCGCGGACGGATCCGGTTTGATTTAAGAATGGAAATTCTGGAATGGTCCAGCGTGAATCCTGAAACAACACCAAACT
CACTGCGAACAAGTGAAGAATGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis