Browse Element(s) Details


OsAffx.26282.1.S1_s_at

Description tigr:9632.m03078
TID=OsAffx.26282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3230011/11glutaredoxin family protein, putative
LOC_Os02g3085011/11glutaredoxin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32280OsAffx.26281.1.S1_at10/114+19158732..19159319hypothetical protein
LOC_Os04g32290NANA4+19161505..19161901hypothetical protein
LOC_Os04g32300OsAffx.26282.1.S1_s_at11/114+19169006..19169413glutaredoxin family protein, putative
LOC_Os04g32310Os.51662.1.S1_at11/114+19178461..19183706Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g32320OsAffx.14090.1.S1_at11/114+19186295..19189420Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os04g32330Os.8748.1.S1_at11/114+19190913..19195380Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26282.1.S1_s_at--520--7492Chr04:19169129..19169153 (25 bp)
GTGGTGTTCAGCGTGAGCAGCTGCT
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--159--10532Chr04:19169135..19169159 (25 bp)
TTCAGCGTGAGCAGCTGCTGCATGT
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--442--9672Chr04:19169136..19169160 (25 bp)
TCAGCGTGAGCAGCTGCTGCATGTG
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--722--1632Chr04:19169138..19169162 (25 bp)
AGCGTGAGCAGCTGCTGCATGTGCC
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--109--4672Chr04:19169139..19169163 (25 bp)
GCGTGAGCAGCTGCTGCATGTGCCA
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--701--3992Chr04:19169140..19169164 (25 bp)
CGTGAGCAGCTGCTGCATGTGCCAC
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--644--4492Chr04:19169165..19169189 (25 bp)
GCCGTGAAGCGCCTCTTCTGCGGCA
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--724--3992Chr04:19169167..19169191 (25 bp)
CGTGAAGCGCCTCTTCTGCGGCATG
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--855--7352Chr04:19169168..19169192 (25 bp)
GTGAAGCGCCTCTTCTGCGGCATGG
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--456--8992Chr04:19169169..19169193 (25 bp)
TGAAGCGCCTCTTCTGCGGCATGGG
LOC_Os04g32300
OsAffx.26282.1.S1_s_at--98--9633Chr04:19169346..19169370 (25 bp)
TCATGGCCGCGCACATCAACGGCTC
LOC_Os04g32300
Target Sequence 
GTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGCGTGCACCCGGCGGT
GCACGAGCTGGACCTCGACCCGCGCGGCCGCGACCTGGAGCGCGCCCTGGCGCGCCTCGTCGGCGCCGGCGGCGCCGCCG
CTGCCGCCGTGCCCGTCGTGTTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTCATGGCCGCGCACATCAACGGC
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26282.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis