Browse Element(s) Details


OsAffx.26327.3.S1_at

Description tigr:9632.m03323
TID=OsAffx.26327.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3457011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34540Os.6272.1.S1_at10/114+20716788..20717943expressed protein
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein
LOC_Os04g34560Os.15412.1.S1_x_at8/114+20725737..20727018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26327.3.S1_at--312--1451Chr04:20732321..20732345 (25 bp)
AGAAGCACGTCGTCGTAGCGTACAG
LOC_Os04g34570
OsAffx.26327.3.S1_at--393--3351Chr04:20732326..20732350 (25 bp)
CACGTCGTCGTAGCGTACAGCGAGA
LOC_Os04g34570
OsAffx.26327.3.S1_at--1071--9391Chr04:20732333..20732357 (25 bp)
TCGTAGCGTACAGCGAGAGGTTGAC
LOC_Os04g34570
OsAffx.26327.3.S1_at--469--7831Chr04:20732432..20732456 (25 bp)
GGTACGCGTTGCATCCAGACGGCCG
LOC_Os04g34570
OsAffx.26327.3.S1_at--915--7151Chr04:20732467..20732491 (25 bp)
GTCTCCGTGGCGAAGAGAACACCCG
LOC_Os04g34570
OsAffx.26327.3.S1_at--979--3971Chr04:20732472..20732496 (25 bp)
CGTGGCGAAGAGAACACCCGACCAC
LOC_Os04g34570
OsAffx.26327.3.S1_at--931--1611Chr04:20732618..20732793 (25 bp)
AGCTGGACGCCCATCAGAGCCTGGG
LOC_Os04g34570
OsAffx.26327.3.S1_at--351--1371Chr04:20732784..20732808 (25 bp)
AGAGCCTGGGCGATCCCAAGCTCCT
LOC_Os04g34570
OsAffx.26327.3.S1_at--501--7971Chr04:20732969..20732993 (25 bp)
GGATCGTGCCAGACGCACACCTACG
LOC_Os04g34570
OsAffx.26327.3.S1_at--419--1391Chr04:20732979..20733003 (25 bp)
AGACGCACACCTACGTGCGGTCTCG
LOC_Os04g34570
OsAffx.26327.3.S1_at--154--3731Chr04:20732989..20733013 (25 bp)
CTACGTGCGGTCTCGCTATCTCGTG
LOC_Os04g34570
Target Sequence 
AGAAGCACGTCGTCGTAGCGTACAGCGAGAGGTTGACGGAGCGGTGGTCATGGGGGAGCACCTCTTCGCCACCGCCACCG
CCCTTCGGCGGCGGCAGGCGGCGCATCACGGGGTACGCGTTGCATCCAGACGGCCGCACCATCTTCGTCTCCGTGGCGAA
GAGAACACCCGACCACGACGACGTCGGCGACCGTCCCGACGAGGAGGTCACCTTCTCCTACGACACCGAGCGCGCCGAGT
GGGCGCGCCGCGGCGGCTGGCTCCTGCCGTTCGACGGCCAGGCCCACTACGACGCCGAGCTGGACGCCCATCAGAGCCTG
GGCGATCCCAAGCTCCTCCCCATGGGGGGCGGCGCGTTCTGCGTCGTCGTCGAGAGCGCGCCGCGCGGCGCCGACTCGGT
CGGCGACGGCGACAAGCTCCTGCTCCGCGTCGCCGTGTTCCGCGACAAGTACGGCAAGAACGGCGAGCTGTTCATGACGA
CGGCGGCGGGCGGGCGCGGATCGTGCCAGACGCACACCTACGTGCGGTCTCGCTATCTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26327.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis