Browse Element(s) Details


OsAffx.26329.1.S1_at

Description tigr:9632.m03328
TID=OsAffx.26329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3462011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein
LOC_Os04g34630Os.5130.1.S1_at11/114+20767108..20768449Peroxidase 72 precursor, putative, expressed
LOC_Os04g34640OsAffx.14137.1.S1_at11/114+20769808..20770973hypothetical protein
LOC_Os04g34640OsAffx.10222.1.S1_x_at1/114+20769808..20770973hypothetical protein
LOC_Os04g34650OsAffx.14902.1.A1_at3/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34650Os.27632.1.S1_at1/114+20772830..20777291retrotransposon protein, putative, unclassified
LOC_Os04g34659OsAffx.27736.1.S1_at7/114+20778305..20778545NA
LOC_Os04g34670Os.8207.1.S1_at11/114+20779783..20785748tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g34680OsAffx.29169.1.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified
LOC_Os04g34680OsAffx.29169.3.S1_at5/114+20788986..20790931retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26329.1.S1_at--973--9311Chr04:20762702..20762726 (25 bp)
TCGCCAAACTCGATGAGGTTCATAA
LOC_Os04g34620
OsAffx.26329.1.S1_at--234--4391Chr04:20762700..20762724 (25 bp)
GCCAAACTCGATGAGGTTCATAACA
LOC_Os04g34620
OsAffx.26329.1.S1_at--381--2551Chr04:20762696..20762720 (25 bp)
AACTCGATGAGGTTCATAACAGGCT
LOC_Os04g34620
OsAffx.26329.1.S1_at--149--6311Chr04:20762691..20762715 (25 bp)
GATGAGGTTCATAACAGGCTAATCC
LOC_Os04g34620
OsAffx.26329.1.S1_at--1019--8871Chr04:20762689..20762713 (25 bp)
TGAGGTTCATAACAGGCTAATCCAT
LOC_Os04g34620
OsAffx.26329.1.S1_at--781--1011Chr04:20762687..20762711 (25 bp)
AGGTTCATAACAGGCTAATCCATGC
LOC_Os04g34620
OsAffx.26329.1.S1_at--515--4111Chr04:20762660..20762684 (25 bp)
CGAAGGACTCGGACGTCGATGAGAT
LOC_Os04g34620
OsAffx.26329.1.S1_at--184--2931Chr04:20762658..20762682 (25 bp)
AAGGACTCGGACGTCGATGAGATCA
LOC_Os04g34620
OsAffx.26329.1.S1_at--1043--4371Chr04:20762602..20762626 (25 bp)
CCAAGAAAAGCAGGGCGTCTCTCAG
LOC_Os04g34620
OsAffx.26329.1.S1_at--648--2431Chr04:20762597..20762621 (25 bp)
AAAAGCAGGGCGTCTCTCAGAGGGC
LOC_Os04g34620
OsAffx.26329.1.S1_at--998--2711Chr04:20762595..20762619 (25 bp)
AAGCAGGGCGTCTCTCAGAGGGCCA
LOC_Os04g34620
Target Sequence 
TCGCCAAACTCGATGAGGTTCATAACAGGCTAATCCATGCGGCGAAGGACTCGGACGTCGATGAGATCAGAGGCCTGCTG
AAAGAGGTTGAGCTGGCCGGCCAAGAAAAGCAGGGCGTCTCTCAGAGGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis