Browse Element(s) Details


OsAffx.26442.3.S1_at

Description tigr:9632.m04052
TID=OsAffx.26442.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=G-patch domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4246011/11G-patch domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26442.3.S1_at--1079--1671Chr04:24905724..24905810 (25 bp)
AGCCGGCAGTACAGCGCAGGACACG
LOC_Os04g42460
OsAffx.26442.3.S1_at--431--9871Chr04:24905733..24905819 (25 bp)
TACAGCGCAGGACACGCTGGGAGCG
LOC_Os04g42460
OsAffx.26442.3.S1_at--997--5631Chr04:24905805..24905829 (25 bp)
GACACGCTGGGAGCGGACGCATCAG
LOC_Os04g42460
OsAffx.26442.3.S1_at--698--7491Chr04:24905885..24905909 (25 bp)
GTGGTGGAGCGCTGCCTCCTTCTGC
LOC_Os04g42460
OsAffx.26442.3.S1_at--775--7511Chr04:24905888..24905912 (25 bp)
GTGGAGCGCTGCCTCCTTCTGCAAG
LOC_Os04g42460
OsAffx.26442.3.S1_at--90--5891Chr04:24905891..24905915 (25 bp)
GAGCGCTGCCTCCTTCTGCAAGCTA
LOC_Os04g42460
OsAffx.26442.3.S1_at--126--9191Chr04:24905897..24905921 (25 bp)
TGCCTCCTTCTGCAAGCTACCATGG
LOC_Os04g42460
OsAffx.26442.3.S1_at--633--3771Chr04:24906109..24906133 (25 bp)
CTCTGACTATGACTACAAGCTTGCA
LOC_Os04g42460
OsAffx.26442.3.S1_at--965--3851Chr04:24906111..24906135 (25 bp)
CTGACTATGACTACAAGCTTGCATT
LOC_Os04g42460
OsAffx.26442.3.S1_at--905--5691Chr04:24906113..24906137 (25 bp)
GACTATGACTACAAGCTTGCATTGC
LOC_Os04g42460
OsAffx.26442.3.S1_at--1046--3691Chr04:24906115..24906139 (25 bp)
CTATGACTACAAGCTTGCATTGCCA
LOC_Os04g42460
Target Sequence 
AGCCGGCAGTACAGCGCAGGACACGCTGGGAGCGGACGCATCAGCGGCGTACCCTCGCCTGATCCACGACCTCGTGATGG
CACCTCCCTTGGATGCGTGGTGGTGGAGCGCTGCCTCCTTCTGCAAGCTACCATGGATTCCATCCTGGATGAGGTCATCT
TGCCCACGCTGGTAGCCGCGGCGGACGTGTTTAGGCTGACGACGTGGTCGAGTAAGCCGAGCGTTTGCGTGGGCATGTGG
ATTCCTCATCTCGGCCACGCCCGCCTACGAATAGTGTACATCATTATAAGCAGGCGGCTCAGAGATCACCTGTGCGGCGG
GATCTCTGACTATGACTACAAGCTTGCATTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26442.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis