Browse Element(s) Details


OsAffx.26595.1.S1_s_at

Description tigr:9632.m05255
TID=OsAffx.26595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5410011/11secondary cell wall-related glycosyltransferase family 47, putative
LOC_Os03g2085011/11secondary cell wall-related glycosyltransferase family 47, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54050OsAffx.16205.1.S1_at2/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.49232.1.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.45982.1.A1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.18764.1.S1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.23640.3.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54060Os.35344.18.S1_x_at11/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060Os.35344.3.S1_x_at9/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060OsAffx.22940.5.S1_x_at3/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54070OsAffx.14405.1.S1_at11/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54070OsAffx.13556.1.S1_x_at1/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54080OsAffx.14405.2.S1_at11/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54080OsAffx.14405.1.S1_at3/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54090OsAffx.14406.1.S1_at11/114+32015634..32015958Rapid ALkalinization Factor family protein
LOC_Os04g54100OsAffx.26595.1.S1_s_at11/114+32016250..32016636secondary cell wall-related glycosyltransferase family 47, putative
LOC_Os04g54110OsAffx.14407.1.S1_at11/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54110Os.47968.2.A1_at1/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54120OsAffx.14408.1.S1_at11/114+32025814..32029115D-mannose binding lectin family protein
LOC_Os04g54130OsAffx.26596.1.S1_at11/114+32029886..32033965receptor-like kinase, putative, expressed
LOC_Os04g54140Os.54694.1.S1_at11/114+32035059..32039199D-mannose binding lectin family protein, expressed
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26595.1.S1_s_at--155--5072Chr03:11784728..11784752 (25 bp)
GCAGCGGAGGCTGCTCGATTACCTC
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--427--1632Chr03:11784730..11784754 (25 bp)
AGCGGAGGCTGCTCGATTACCTCGC
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--736--8352Chr03:11784780..11784804 (25 bp)
GGCGGGAGGGACCACGTCGTGCTCG
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--105--4852Chr03:11784835..11784859 (25 bp)
GCTACAAGCTCTGGCCATGCGTCTT
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--742--2212Chr03:11784838..11784862 (25 bp)
ACAAGCTCTGGCCATGCGTCTTCGT
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--766--1572Chr03:11784841..11784865 (25 bp)
AGCTCTGGCCATGCGTCTTCGTGCT
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--437--3532Chr03:11784850..11784874 (25 bp)
CATGCGTCTTCGTGCTCTGCGACTT
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--467--4652Chr03:11784853..11784877 (25 bp)
GCGTCTTCGTGCTCTGCGACTTCGG
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--436--9152Chr03:11784867..11784891 (25 bp)
TGCGACTTCGGGAGGTACCCGCCCA
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--735--5672Chr03:11784870..11784894 (25 bp)
GACTTCGGGAGGTACCCGCCCAGCG
LOC_Os03g20850
OsAffx.26595.1.S1_s_at--626--952Chr03:11784910..11784934 (25 bp)
AGGACGTCATCGCGCCGTACCGGCA
LOC_Os03g20850
Target Sequence 
GCAGCGGAGGCTGCTCGATTACCTCGCCGCGCGCCCCGAGTGGCGGAGGTCCGGCGGGAGGGACCACGTCGTGCTCGCGC
ACCACCCCAACGGGATGCTCGACGCGCGCTACAAGCTCTGGCCATGCGTCTTCGTGCTCTGCGACTTCGGGAGGTACCCG
CCCAGCGTCGTTGGCCTCGACAAGGACGTCATCGCGCCGTACCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26595.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis