Browse Element(s) Details


OsAffx.26620.1.S1_at

Description tigr:9632.m05428
TID=OsAffx.26620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5576011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26620.1.S1_at--613--2011Chr04:32976481..32976505 (25 bp)
ACTACTCACTGATACTATGACGGCT
LOC_Os04g55760
OsAffx.26620.1.S1_at--808--8531Chr04:32976520..32976544 (25 bp)
TGGAGCTTCAAGGTCAATTTCAATT
LOC_Os04g55760
OsAffx.26620.1.S1_at--1124--931Chr04:32976553..32976577 (25 bp)
AGGAATACTCACCATCATCCAGGGC
LOC_Os04g55760
OsAffx.26620.1.S1_at--611--3531Chr04:32976568..32976592 (25 bp)
CATCCAGGGCACTTATGGTTATCTA
LOC_Os04g55760
OsAffx.26620.1.S1_at--340--10191Chr04:32976602..32976626 (25 bp)
TATTATTACTCTAGTCGACTGACTG
LOC_Os04g55760
OsAffx.26620.1.S1_at--395--291Chr04:32976642..32976666 (25 bp)
ATAGTTTCGGTGTCATCCTAGCTGA
LOC_Os04g55760
OsAffx.26620.1.S1_at--1025--6791Chr04:32976689..32976713 (25 bp)
GTTTTCTCCTCCGAAACATCAGAAA
LOC_Os04g55760
OsAffx.26620.1.S1_at--94--8291Chr04:32976724..32976748 (25 bp)
GGCATCATACTTTGTGTCGTTCATA
LOC_Os04g55760
OsAffx.26620.1.S1_at--562--7211Chr04:32976739..32976763 (25 bp)
GTCGTTCATAAGAGACAACCGCTTG
LOC_Os04g55760
OsAffx.26620.1.S1_at--498--2211Chr04:32976753..32976777 (25 bp)
ACAACCGCTTGTCAGATATTCTGGA
LOC_Os04g55760
OsAffx.26620.1.S1_at--963--6511Chr04:32976767..32976791 (25 bp)
GATATTCTGGACTCTCAAATTGTTA
LOC_Os04g55760
Target Sequence 
ACTACTCACTGATACTATGACGGCTAAAGTATCGGACTTTGGAGCTTCAAGGTCAATTTCAATTGACGAGACAGGAATAC
TCACCATCATCCAGGGCACTTATGGTTATCTAGATCCTGAATATTATTACTCTAGTCGACTGACTGAGAAAAGCGATATT
TATAGTTTCGGTGTCATCCTAGCTGAACTATTGACAAGGGTAACACCGGTTTTCTCCTCCGAAACATCAGAAAGGACAAG
CCTGGCATCATACTTTGTGTCGTTCATAAGAGACAACCGCTTGTCAGATATTCTGGACTCTCAAATTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis