Browse Element(s) Details


OsAffx.26765.1.S1_at

Description tigr:9633.m00602
TID=OsAffx.26765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0679011/11hypothetical protein
LOC_Os05g068143/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26765.1.S1_at--119--1791Chr05:3526502..3526526 (25 bp)
ACCGTCAGCGTCACGGACATCGCAA
LOC_Os05g06790
OsAffx.26765.1.S1_at--826--9651Chr05:3526506..3526530 (25 bp)
TCAGCGTCACGGACATCGCAAGCGT
LOC_Os05g06790
OsAffx.26765.1.S1_at--27--1651Chr05:3526508..3526532 (25 bp)
AGCGTCACGGACATCGCAAGCGTAG
LOC_Os05g06790
OsAffx.26765.1.S1_at--181--4031Chr05:3526510..3526534 (25 bp)
CGTCACGGACATCGCAAGCGTAGCA
LOC_Os05g06790
OsAffx.26765.1.S1_at--682--9292Chr05:3526559..3526583 (25 bp)
TCTCGTTCCGTCGTCGGCATTTCCT
LOC_Os05g06790
OsAffx.26765.1.S1_at--248--2272Chr05:3527834..3527858 (25 bp)
AAATCTAGCAAAATCAACCACCTGA
LOC_Os05g06790
OsAffx.26765.1.S1_at--199--452Chr05:3527836..3527860 (25 bp)
ATCTAGCAAAATCAACCACCTGATG
LOC_Os05g06790
OsAffx.26765.1.S1_at--915--1711Chr05:3527850..3527874 (25 bp)
ACCACCTGATGGGAACATGTACGAA
LOC_Os05g06790
OsAffx.26765.1.S1_at--724--1731Chr05:3527853..3527877 (25 bp)
ACCTGATGGGAACATGTACGAAGCA
LOC_Os05g06790
OsAffx.26765.1.S1_at--653--6251Chr05:3527857..3527881 (25 bp)
GATGGGAACATGTACGAAGCAAAAT
LOC_Os05g06790
OsAffx.26765.1.S1_at--163--2431Chr05:3527883..3527907 (25 bp)
AAAACTTAGATGTTGTTAGAGATAA
LOC_Os05g06790
Target Sequence 
ACCGTCAGCGTCACGGACATCGCAAGCGTAGCAGACAATAGCATGATCCGGAAGGCTTCTCGTTCCGTCGTCGGCATTTC
CTCCAGGATACCTGATGGGAAGGAGATTATGCAATGCAGTGGTATCGTGGTCGATTGGAACAAGACCAGCAGGTTGGCGA
CAATCGTAACTTGCTCTGCAGCCGTGTGCTTTGATGGTGCACTAGTCCATCCCAACCCCAAGGATGAAGAAAAATCTAGC
AAAATCAACCACCTGATGGGAACATGTACGAAGCAAAATGAAAACTTAGATGTTGTTAGAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis