Browse Element(s) Details


OsAffx.26813.1.S1_at

Description tigr:9633.m00911
TID=OsAffx.26813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1049011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10440Os.26886.6.S1_s_at7/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.26886.2.S1_s_at6/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.16467.1.S1_at4/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_x_at3/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_at2/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.20851.1.A1_x_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.14620.1.S1_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10450NANA5+5669573..5670100hypothetical protein
LOC_Os05g10460Os.26886.1.S1_x_at4/115+5672145..5673819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10470Os.26886.3.S1_x_at3/115+5674006..5675342transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10480OsAffx.14620.1.S1_at11/115+5678178..5678783expressed protein
LOC_Os05g10480OsAffx.14618.1.S1_x_at1/115+5678178..5678783expressed protein
LOC_Os05g10490OsAffx.26813.1.S1_at11/115+5687350..5688983hypothetical protein
LOC_Os05g10490Os.12074.1.S1_at1/115+5687350..5688983hypothetical protein
LOC_Os05g10500NANA5+5690239..5690469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10510OsAffx.4856.1.S1_x_at1/115+5692639..5696390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10520NANA5+5696780..5701587retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10530NANA5+5702407..5705698retrotransposon protein, putative, unclassified
LOC_Os05g10540NANA5+5706328..5712483retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26813.1.S1_at--97--10651Chr05:5687386..5687410 (25 bp)
TTCCGGTCCAACCAAAAGTATATGG
LOC_Os05g10490
OsAffx.26813.1.S1_at--1043--6731Chr05:5687403..5687427 (25 bp)
GTATATGGAGGCACCGGTACCTTAC
LOC_Os05g10490
OsAffx.26813.1.S1_at--332--931Chr05:5687411..5687917 (25 bp)
AGGCACCGGTACCTTACGTGATCAA
LOC_Os05g10490
OsAffx.26813.1.S1_at--276--7851Chr05:5687418..5687924 (25 bp)
GGTACCTTACGTGATCAAGCCAAGA
LOC_Os05g10490
OsAffx.26813.1.S1_at--843--6451Chr05:5687912..5687936 (25 bp)
GATCAAGCCAAGATACGTATACAGT
LOC_Os05g10490
OsAffx.26813.1.S1_at--459--1891Chr05:5687926..5688212 (25 bp)
ACGTATACAGTGACGCCGTGTCGGA
LOC_Os05g10490
OsAffx.26813.1.S1_at--917--7451Chr05:5688205..5688229 (25 bp)
GTGTCGGACTTACTCGCGTATCGTG
LOC_Os05g10490
OsAffx.26813.1.S1_at--190--10471Chr05:5688214..5688238 (25 bp)
TTACTCGCGTATCGTGGCCAGCAGT
LOC_Os05g10490
OsAffx.26813.1.S1_at--712--8451Chr05:5688228..5688252 (25 bp)
TGGCCAGCAGTCTCTCACTAGGCAG
LOC_Os05g10490
OsAffx.26813.1.S1_at--880--9691Chr05:5688242..5688266 (25 bp)
TCACTAGGCAGCCATGCAGTCACGT
LOC_Os05g10490
OsAffx.26813.1.S1_at--403--3531Chr05:5688254..5688358 (25 bp)
CATGCAGTCACGTCCGCAGCGGAGG
LOC_Os05g10490
Target Sequence 
TTCCGGTCCAACCAAAAGTATATGGAGGCACCGGTACCTTACGTGATCAAGCCAAGATACGTATACAGTGACGCCGTGTC
GGACTTACTCGCGTATCGTGGCCAGCAGTCTCTCACTAGGCAGCCATGCAGTCACGTCCGCAGCGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis