Browse Element(s) Details


OsAffx.26830.1.S1_at

Description tigr:9633.m00994
TID=OsAffx.26830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein
LOC_Os05g11320OsAffx.9949.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.2256.1.S1_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11320Os.7992.3.S1_x_at1/115+6373200..6375405Metallothionein-like protein type 3, putative, expressed
LOC_Os05g11330Os.55257.1.S1_at11/115+6385067..6385803Rapid ALkalinization Factor family protein, expressed
LOC_Os05g11340OsAffx.26831.1.S1_at11/115+6388276..6389171hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26830.1.S1_at--842--5331Chr05:6364170..6364192 (23 bp)
GAAGTTGTACCTAAGCTCAGCTTGA
LOC_Os05g11310
OsAffx.26830.1.S1_at--264--2891Chr05:6364209..6364233 (25 bp)
AAGGGTGGCTGTTAAGTTGTCTATC
LOC_Os05g11310
OsAffx.26830.1.S1_at--950--6631Chr05:6364224..6364248 (25 bp)
GTTGTCTATCAAGGCCATGGTTTAT
LOC_Os05g11310
OsAffx.26830.1.S1_at--450--5991Chr05:6364291..6364315 (25 bp)
GAGACTAATAAGCTGGTGGTTCATT
LOC_Os05g11310
OsAffx.26830.1.S1_at--857--1431Chr05:6364485..6364509 (25 bp)
AGAACTTCAGACACATTGGGATCCT
LOC_Os05g11310
OsAffx.26830.1.S1_at--1000--7951Chr05:6364503..6364527 (25 bp)
GGATCCTGGTGGCACTGGCAATAAT
LOC_Os05g11310
OsAffx.26830.1.S1_at--936--5191Chr05:6364520..6364544 (25 bp)
GCAATAATTTGCATCGACTCGAGGA
LOC_Os05g11310
OsAffx.26830.1.S1_at--638--3312Chr05:6364580..6364604 (25 bp)
CACAGTTGGGCTGCAGATGGGCTAA
LOC_Os05g11310
OsAffx.26830.1.S1_at--255--10453Chr07:3539564..3539588 (25 bp)
TTAGTCATGTTTCAATCCTGGCCCA
NONE
OsAffx.26830.1.S1_at--190--5171Chr05:6364671..6364695 (25 bp)
GCAAGCACTTGGAGGCATCAAACAT
LOC_Os05g11310
OsAffx.26830.1.S1_at--1015--10851Chr05:6364754..6364778 (25 bp)
TTGGCACCCTTCTTGATCTTCTTCT
LOC_Os05g11310
Target Sequence 
GAAGTTGTACCTAAGCTCAGCTTGATTAAGAATGCAATGGGAAGGGTGGCTGTTAAGTTGTCTATCAAGGCCATGGTTTA
TGACGAAAGGACAATGATACTAGAGTCAACAAAGAAGAAAATTGAGACTAATAAGCTGGTGGTTCATTGGAATATCTTTA
TACTTGTATTCGATCCAGGTAAAGATAATGACACATTGGGGGAGAGGGTTGCTAATTATATGCAAGAACTTCAGACACAT
TGGGATCCTGGTGGCACTGGCAATAATTTGCATCGACTCGAGGACAAGTCGAATATTAAGGAGAGGGGATTGTTAGGAAC
ACAGTTGGGCTGCAGATGGGCTAAGTTAGTCATGTTTCAATCCTGGCCCAAACAAGCACAACTAGCAGCATATATATATG
AGCAGCAACAGCAAGCACTTGGAGGCATCAAACATTTGGAATCGGCAAAGGCGGCTTCGGCCACGACGGCGGCGGCTACT
TGGGTGGCCGGGCTTGGCACCCTTCTTGATCTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis