Browse Element(s) Details


OsAffx.26937.4.S1_x_at

Description tigr:9633.m01594
TID=OsAffx.26937.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1781010/11SHR5-receptor-like kinase, putative
LOC_Os05g176044/11SHR5-receptor-like kinase, putative, expressed
LOC_Os04g224701/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17780OsAffx.22896.1.S1_x_at1/115+10194574..10199529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17790Os.47999.3.S1_x_at1/115+10204347..10206657retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17800OsAffx.4364.1.S1_at10/115+10212685..10213940SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.4.S1_x_at10/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.27420.2.A1_s_at8/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.1.S1_x_at3/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.53303.1.S1_at1/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17820NANA5+10229111..10229803retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.54726.1.S1_at9/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.52004.1.S1_at3/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830OsAffx.21264.1.S1_x_at2/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17840Os.10731.1.A1_a_at11/115+10240730..10245535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17840Os.45173.1.S1_x_at3/115+10240730..10245535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17849Os.33107.1.S1_at4/115+10247555..10248089NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26937.4.S1_x_at--266--731Chr05:10225129..10225153 (25 bp)
ATGTTCTACTTGACACTAATCTCGT
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--52--3311Chr05:10225142..10225166 (25 bp)
CACTAATCTCGTTCCAAAGATCTCT
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--1036--6512Chr05:10225369..10225393 (25 bp)
GATATTTTTGCATTCGGAGTGGTCA
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--954--1092Chr05:10225386..10225410 (25 bp)
AGTGGTCATGCTGGAGACTGTCGCT
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--456--4731Chr05:10225408..10225432 (25 bp)
GCTGGGCGACCAAACACCGACAACT
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--551--4092Chr05:10225425..10225449 (25 bp)
CGACAACTCCCTCGAGGAAAGCAAG
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--1114--1271NONE
AGATCTGTCTCCTTGAATGGGCATG
NONE
OsAffx.26937.4.S1_x_at--59--5212Chr05:10225600..10225624 (25 bp)
GAATTGTTGACCCAAGTCTCAAGGA
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--880--10111Chr05:10225654..10225678 (25 bp)
TATGTGTTGCACTTGTCTGCACTCA
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--7--10831Chr05:10225714..10225738 (25 bp)
TTGTGGCAATGCTGACTGGAGATGT
LOC_Os05g17810
OsAffx.26937.4.S1_x_at--671--7212Chr05:10225737..10225761 (25 bp)
GTCGATGTGGCTAAGGTGGTCACCA
LOC_Os05g17810
Target Sequence 
ATGTTCTACTTGACACTAATCTCGTTCCAAAGATCTCTGACTTTGGACTTGCCAAACTCTATGATGAAAATCAAACTCAT
GTGAGCACTAGAATTGCGGGCACATTGGGTTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGCTGA
TATTTTTGCATTCGGAGTGGTCATGCTGGAGACTGTCGCTGGGCGACCAAACACCGACAACTCCCTCGAGGAAAGCAAGA
TCTGTCTCCTTGAATGGGCATGGGGCCTGTATGAAAAGGATCAAGCACTTGGAATTGTTGACCCAAGTCTCAAGGAATTT
GGCAAGGATGAAGCTTTTAGAGCCATATGTGTTGCACTTGTCTGCACTCAGGGCTCACCGCACCAGCGACCGCCAATGTC
GAAGGTTGTGGCAATGCTGACTGGAGATGTCGATGTGGCTAAGGTGGTCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26937.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis