Browse Element(s) Details


OsAffx.27060.1.S1_at

Description tigr:9634.m04936
TID=OsAffx.27060.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2840411/11hypothetical protein
LOC_Os01g0592011/11hypothetical protein
LOC_Os06g5049911/11hypothetical protein
LOC_Os06g5053011/11hypothetical protein
LOC_Os06g5056911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28360OsAffx.27058.1.S1_at11/115+16538799..16539239hypothetical protein
LOC_Os05g28370Os.47889.1.S1_at11/115+16544210..16547643expressed protein
LOC_Os05g28380OsAffx.27059.1.S1_at10/115+16548308..16549641hypothetical protein
LOC_Os05g28390NANA5+16554656..16555354hypothetical protein
LOC_Os05g28404OsAffx.27060.1.S1_at11/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_x_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein
LOC_Os05g28450NANA5+16578296..16578727hypothetical protein
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27060.1.S1_at--566--5115Chr06:30613068..30613092 (25 bp)
GCACATATTATTTGGTACGAAGTCA
LOC_Os06g50569
OsAffx.27060.1.S1_at--398--7855Chr06:30613081..30613105 (25 bp)
GGTACGAAGTCAGAACTACACAACT
LOC_Os06g50569
OsAffx.27060.1.S1_at--358--2215Chr06:30613100..30613124 (25 bp)
ACAACTTATATCATGCACGCACAGC
LOC_Os06g50569
OsAffx.27060.1.S1_at--535--655Chr06:30613112..30613136 (25 bp)
ATGCACGCACAGCAAGTGATTTTGA
LOC_Os06g50569
OsAffx.27060.1.S1_at--1050--10375Chr06:30613131..30613155 (25 bp)
TTTTGAAGATACTTGGACGGCCCTA
LOC_Os06g50569
OsAffx.27060.1.S1_at--786--2795Chr06:30613136..30613160 (25 bp)
AAGATACTTGGACGGCCCTAGTCAA
LOC_Os06g50569
OsAffx.27060.1.S1_at--287--10875Chr06:30613143..30613167 (25 bp)
TTGGACGGCCCTAGTCAATGAGTAT
LOC_Os06g50569
OsAffx.27060.1.S1_at--126--3935Chr06:30613148..30613172 (25 bp)
CGGCCCTAGTCAATGAGTATGGTCT
LOC_Os06g50569
OsAffx.27060.1.S1_at--1039--6555Chr06:30613237..30613357 (25 bp)
GATTCACAGGAGATAGATACAGACC
LOC_Os06g50569
OsAffx.27060.1.S1_at--538--6475Chr06:30613348..30613372 (25 bp)
GATACAGACCGTAAAGATGTCAAGA
LOC_Os06g50569
OsAffx.27060.1.S1_at--1034--7515Chr06:30613378..30613402 (25 bp)
GTGGAGGCTCCTAAGTTGATCATTT
LOC_Os06g50569
Target Sequence 
GCACATATTATTTGGTACGAAGTCAGAACTACACAACTTATATCATGCACGCACAGCAAGTGATTTTGAAGATACTTGGA
CGGCCCTAGTCAATGAGTATGGTCTTCAAGAGGAGAATGCATATCTCCAAAAGGCGCAGATGTTAATAGACGATGAAACG
AAGCCCAATGATTCACAGGAGATAGATACAGACCGTAAAGATGTCAAGAGGGAGGTGGAGGCTCCTAAGTTGATCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis