Browse Element(s) Details


OsAffx.27204.1.S1_x_at

Description tigr:9633.m03425
TID=OsAffx.27204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ferredoxin (2Fe-2S), root - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g371408/11Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g371502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27204.1.S1_x_at--124--1531Chr05:21626132..21626156 (25 bp)
AGCATCTTCAAGTCCGTTTAGCAAC
LOC_Os05g37150
OsAffx.27204.1.S1_x_at--1067--1171Chr05:21626107..21626131 (25 bp)
AGTACTACTAATTGCCCTTGCTGTA
LOC_Os05g37150
OsAffx.27204.1.S1_x_at--745--4311NONE
CCTTGCTGTACTTGAACTGCCACGT
NONE
OsAffx.27204.1.S1_x_at--1001--1311Chr05:21623280..21623304 (25 bp)
AGATGGCAACTGCAACTGCTCCGAG
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--516--9091Chr05:21623264..21623288 (25 bp)
TGCTCCGAGATTGTGCTTTCCTAAA
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--494--2451Chr05:21623149..21623173 (25 bp)
AACAAGTTCAGGGTGTCCGCGACAG
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--827--8711Chr05:21623090..21623114 (25 bp)
TGTCGAGCACGAGTTTGAAGCCCCT
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--405--8991Chr05:21623075..21623099 (25 bp)
TGAAGCCCCTGAAGATACCTACATT
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--877--6431Chr05:21622998..21623022 (25 bp)
GATCATGCTCCACATGTGCGGGTAA
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--1084--7651Chr05:21622910..21622934 (25 bp)
GGGATACGTTCTGACATGCATTTCG
LOC_Os05g37140
OsAffx.27204.1.S1_x_at--501--631Chr05:21622895..21622919 (25 bp)
ATGCATTTCGTACCCTAAGGCGGAT
LOC_Os05g37140
Target Sequence 
AGCATCTTCAAGTCCGTTTAGCAACAGTACTACTAATTGCCCTTGCTGTACTTGAACTGCCACGTGAATACACGATGTAT
TGTATTGGCTTGTTTGTGATACTTGCACAATCAAGTAATCAACCATTGTCTGATCAGACTATCGAGATGGCAACTGCAAC
TGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAA
AGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTT
ATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGCCGGGGT
GGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGG
AAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27204.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis