Browse Element(s) Details


OsAffx.27227.1.S1_at

Description tigr:9633.m03580
TID=OsAffx.27227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=histone H2B
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3856011/11Histone H2B, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27227.1.S1_at--883--9191Chr05:22541961..22541985 (25 bp)
TGCCAATTCGAGTCTTCTCAACCTC
LOC_Os05g38560
OsAffx.27227.1.S1_at--1124--91Chr05:22541966..22541990 (25 bp)
ATTCGAGTCTTCTCAACCTCTCGAT
LOC_Os05g38560
OsAffx.27227.1.S1_at--594--3251Chr05:22541979..22542003 (25 bp)
CAACCTCTCGATCCGGGCGTGATGG
LOC_Os05g38560
OsAffx.27227.1.S1_at--1100--531Chr05:22541989..22542013 (25 bp)
ATCCGGGCGTGATGGTGCCGAAGGC
LOC_Os05g38560
OsAffx.27227.1.S1_at--828--1671Chr05:22542022..22542046 (25 bp)
AGCCGGCAGAGAAGAAGCCAGCAGA
LOC_Os05g38560
OsAffx.27227.1.S1_at--505--1331Chr05:22542044..22542212 (25 bp)
AGAGGAGAAGGTGCATCCAGACATA
LOC_Os05g38560
OsAffx.27227.1.S1_at--105--1051Chr05:22542196..22542220 (25 bp)
AGGTGCATCCAGACATAGGAATCTC
LOC_Os05g38560
OsAffx.27227.1.S1_at--1117--4971Chr05:22542200..22542224 (25 bp)
GCATCCAGACATAGGAATCTCCTCC
LOC_Os05g38560
OsAffx.27227.1.S1_at--403--9231Chr05:22542203..22542227 (25 bp)
TCCAGACATAGGAATCTCCTCCAAG
LOC_Os05g38560
OsAffx.27227.1.S1_at--52--3531Chr05:22542239..22542263 (25 bp)
CATGAATTCCTTCGTCAACGACATT
LOC_Os05g38560
OsAffx.27227.1.S1_at--1071--10651Chr05:22542245..22542269 (25 bp)
TTCCTTCGTCAACGACATTTTCGAG
LOC_Os05g38560
Target Sequence 
TGCCAATTCGAGTCTTCTCAACCTCTCGATCCGGGCGTGATGGTGCCGAAGGCGGAGAAGAAGCCGGCAGAGAAGAAGCC
AGCAGAGGAGAAGGTGCATCCAGACATAGGAATCTCCTCCAAGGCCATGTCCATCATGAATTCCTTCGTCAACGACATTT
TCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis