Browse Element(s) Details


OsAffx.27378.1.S1_at

Description tigr:9633.m04596
TID=OsAffx.27378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=57154-58047
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4907011/11NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49100Os.10609.1.S1_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed
LOC_Os05g49100Os.28828.1.S2_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006098biological_processpentose-phosphate shunt
GO:0003824molecular_functioncatalytic activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27378.1.S1_at--1062--3931Chr05:28049503..28049527 (25 bp)
CGGCTGGGTGCTACGCCGTCGACTC
LOC_Os05g49070
OsAffx.27378.1.S1_at--1041--4071Chr05:28049178..28049202 (25 bp)
CGAGCGCATGCTGCGCCGTGAGTTC
LOC_Os05g49070
OsAffx.27378.1.S1_at--820--611Chr05:28049171..28049195 (25 bp)
ATGCTGCGCCGTGAGTTCGCGTCCG
LOC_Os05g49070
OsAffx.27378.1.S1_at--733--1231Chr05:28049158..28049182 (25 bp)
AGTTCGCGTCCGGTGGCTCCGTGAA
LOC_Os05g49070
OsAffx.27378.1.S1_at--454--7731Chr05:28049147..28049171 (25 bp)
GGTGGCTCCGTGAAGTACATCATCA
LOC_Os05g49070
OsAffx.27378.1.S1_at--222--971Chr05:28049122..28049146 (25 bp)
AGGACCTTGGCATGGCGCTGGAGAC
LOC_Os05g49070
OsAffx.27378.1.S1_at--937--4611Chr05:28049057..28049081 (25 bp)
GCGATGTTCCGGCAGATGTTCTCCG
LOC_Os05g49070
OsAffx.27378.1.S1_at--446--731Chr05:28049054..28049078 (25 bp)
ATGTTCCGGCAGATGTTCTCCGCGA
LOC_Os05g49070
OsAffx.27378.1.S1_at--94--9291Chr05:28049050..28049074 (25 bp)
TCCGGCAGATGTTCTCCGCGATGGC
LOC_Os05g49070
OsAffx.27378.1.S1_at--809--5731Chr05:28049015..28049039 (25 bp)
GACGGCGACCTGAGCCTCCAGGGAT
LOC_Os05g49070
OsAffx.27378.1.S1_at--616--5831Chr05:28049009..28049033 (25 bp)
GACCTGAGCCTCCAGGGATTGATCA
LOC_Os05g49070
Target Sequence 
CGGCTGGGTGCTACGCCGTCGACTCCCCGGTCTCCGGCGGCGACGTCGGCGCGCGCGACGGCGCGCTCGCCCTCCTCGCC
GGTGGCGACGAGGCGGTGGTGAGCTGGCTCGCGCCGCTCTTCGCCCACCTCGGCAGGCCGACCTACATGGGCCCGCCCGG
CAGCGGCCAGAGCAGCAAGATCGCGAACCAGATCGCGGTGGCCGGGGCGGTGGTCGGTGCCAGCGAGGCGCTGGCGTTCG
CCAACGCGGCGGGGCTCGACGCGCCGCTGTTCCTCGACGCGGTGTCCAAGGGCGCGGCGGGTTCGCGCGTCATGGACATC
TTCGGCGAGCGCATGCTGCGCCGTGAGTTCGCGTCCGGTGGCTCCGTGAAGTACATCATCAAGGACCTTGGCATGGCGCT
GGAGACCGAGGAGGGGCCGGAGGGGGCCAAGGCGCTGCCAGGGGCGGCGATGTTCCGGCAGATGTTCTCCGCGATGGCGG
CGAACGGCGACGGCGACCTGAGCCTCCAGGGATTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis