Browse Element(s) Details


OsAffx.27387.2.S1_at

Description tigr:9633.m04682
TID=OsAffx.27387.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4983011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27387.2.S1_at--57--1731Chr05:28515015..28515039 (25 bp)
ACCAGGACGAGGAACTGAGCATCAC
LOC_Os05g49830
OsAffx.27387.2.S1_at--701--5771Chr05:28515020..28515044 (25 bp)
GACGAGGAACTGAGCATCACGGTGA
LOC_Os05g49830
OsAffx.27387.2.S1_at--613--9351Chr05:28515087..28515111 (25 bp)
TCGACATCGTCGAGAACGGGTACAA
LOC_Os05g49830
OsAffx.27387.2.S1_at--1079--7211Chr05:28515095..28515119 (25 bp)
GTCGAGAACGGGTACAACAGGGCAC
LOC_Os05g49830
OsAffx.27387.2.S1_at--608--4671Chr05:28515186..28515210 (25 bp)
GCGGGCACGGCTTCAAGCGCCGCTT
LOC_Os05g49830
OsAffx.27387.2.S1_at--286--8651Chr05:28515306..28515330 (25 bp)
TGGGCACAGAGCTGGCGATCGACAC
LOC_Os05g49830
OsAffx.27387.2.S1_at--728--5632Chr05:28515326..28515350 (25 bp)
GACACGGGCGAGTCGCCGTACCTGA
LOC_Os05g49830
OsAffx.27387.2.S1_at--897--8172Chr05:28515360..28515384 (25 bp)
GGAACGAGCTGGTGTGGCACAACCT
LOC_Os05g49830
OsAffx.27387.2.S1_at--873--1851Chr05:28515363..28515387 (25 bp)
ACGAGCTGGTGTGGCACAACCTCGA
LOC_Os05g49830
OsAffx.27387.2.S1_at--26--8471Chr05:28515462..28515486 (25 bp)
TGGCGCTGGCGAACAAGTCCTACGG
LOC_Os05g49830
OsAffx.27387.2.S1_at--851--4051Chr05:28515559..28515583 (25 bp)
CGATGGCCGCTGGACTCTGATGGAC
LOC_Os05g49830
Target Sequence 
ACCAGGACGAGGAACTGAGCATCACGGTGACGGGACACAGCCTCGGCGCCGCACTCGCGACGCTGAACGCGTTCGACATC
GTCGAGAACGGGTACAACAGGGCACCCCGCGCCGCGGCAGCGGCGGCGGGCTGCCCGGTCACCGCGTTCGTGTTCGCCAG
CCCGCGCGTCGGCGGGCACGGCTTCAAGCGCCGCTTCGACGGCGCGCGTGGCCTCGGCCTCCGCCTCCTCCGCGTCCGCA
ACGCGCGCGACGTCGTCCCCAGGTACCCGCCGGCGCCGCCGTACCACGGCGTGGGCACAGAGCTGGCGATCGACACGGGC
GAGTCGCCGTACCTGAGGAGGCCCGGGAACGAGCTGGTGTGGCACAACCTCGAGTGCTACCTGCACGGCGTGGCCGGCGC
GCGCGGCGGCGAGGCCGGGCGGTTCAAGCTCGCCGTGGAGCGCGACGTGGCGCTGGCGAACAAGTCCTACGGCGCGCTGC
GCGACGAGCACGCCGTGCCGGCCGGGTGGTGGATCCCGTCGAACAGGGGCATGGTGAGAGGCGCCGATGGCCGCTGGACT
CTGATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27387.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis