Browse Element(s) Details


OsAffx.27423.1.S1_at

Description tigr:9634.m00170
TID=OsAffx.27423.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0264011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed
LOC_Os06g02600Os.5273.2.S1_x_at10/116+921217..924267DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610OsAffx.27445.2.S1_x_at11/116+924433..925154hypothetical protein
LOC_Os06g02610OsAffx.27445.1.S1_x_at4/116+924433..925154hypothetical protein
LOC_Os06g02620Os.44821.1.A1_x_at10/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02620Os.7738.1.S1_at8/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02630Os.32596.1.S1_x_at11/116+932239..935006expressed protein
LOC_Os06g02630OsAffx.27427.1.S1_at1/116+932239..935006expressed protein
LOC_Os06g02640OsAffx.27423.1.S1_at11/116+936167..939109hypothetical protein
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein
LOC_Os06g02680Os.52461.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02680OsAffx.14477.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02690OsAffx.27425.1.S1_at11/116+962221..962906hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27423.1.S1_at--771--9952Chr07:28423661..28423685 (25 bp)
TACCCGCGGTTCATGTGGCTCACAG
NONE
OsAffx.27423.1.S1_at--568--8312Chr07:28423645..28423669 (25 bp)
GGCTCACAGCCGGTATCGGACATGC
NONE
OsAffx.27423.1.S1_at--1114--9052Chr07:28423603..28423627 (25 bp)
TGCATATGTGCTTCCGCCGGAACAT
NONE
OsAffx.27423.1.S1_at--162--7212Chr07:28423571..28423595 (25 bp)
GTCGTCGAGCTGTACTCCGGGTCTG
NONE
OsAffx.27423.1.S1_at--249--7352Chr07:28423463..28423487 (25 bp)
GTGAATGGACGGTCTGTCGTTGTCA
NONE
OsAffx.27423.1.S1_at--671--7372Chr07:28423423..28423447 (25 bp)
GTGACTACGTGAACGGGTGCTGCAA
NONE
OsAffx.27423.1.S1_at--826--5732Chr07:28423347..28423371 (25 bp)
GACTGTGTGGAAGAAGCTTGGCTCA
NONE
OsAffx.27423.1.S1_at--408--71510Chr12:15433954..15433977 (24 bp)
GTCTTTTTACAGCTCTAACAGATGT
NONE
OsAffx.27423.1.S1_at--268--2492Chr07:28423286..28423310 (25 bp)
AACAGATGTCTAACTAACGGCTTAT
NONE
OsAffx.27423.1.S1_at--599--2572Chr12:6864080..6864104 (25 bp)
AACGGCTTATGGACGGCGATGGCAC
NONE
OsAffx.27423.1.S1_at--1033--831Chr06:937021..937045 (25 bp)
ATGGCACTTAGTAGACGTTCGGGAA
LOC_Os06g02640
Target Sequence 
TACCCGCGGTTCATGTGGCTCACAGCCGGTATCGGACATGCGCCGGCGATCCCGACGCTGCATATGTGCTTCCGCCGGAA
CATGGAGCTGGTCGTCGAGCTGTACTCCGGGTCTGGGTGGCTGTGCCTCGACGACGGCGGTGGTGGCGCACGCTGCCGCC
GCTGCAACGGGAGGATCCGCGTCGTCGTCACCGCCGCCGCCGTGAATGGACGGTCTGTCGTTGTCAGGGTGGTGGACGAG
TGTGACTACGTGAACGGGTGCTGCAACGAGGACGGCTTCGCGCCCCCGTGCCAGGACAACGTTGGCGGCGAGTCGCTGAC
TGTGTGGAAGAAGCTTGGCTCAACGAGAACAGGGGCAAATAGGTCTTTTTACAGCTCTAACAGATGTCTAACTAACGGCT
TATGGACGGCGATGGCACTTAGTAGACGTTCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis