Browse Element(s) Details


OsAffx.27444.1.S1_at

Description tigr:9634.m00275
TID=OsAffx.27444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0369011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03670OsAffx.27442.1.S1_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.4463.1.S1_s_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.57517.1.S1_x_at1/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03676OsAffx.27443.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676OsAffx.27443.1.S1_x_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676Os.44812.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03682Os.4465.1.S1_a_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682Os.4465.1.S1_s_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690Os.5600.1.S1_s_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03690OsAffx.27444.1.S1_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03700Os.34161.2.S1_x_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_a_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03710Os.31950.1.S1_at11/116+1464501..1467594GRAS family transcription factor containing protein, expressed
LOC_Os06g03720Os.9043.1.S1_at11/116+1469866..1471141Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740OsAffx.27445.1.S1_at11/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740OsAffx.27445.1.S1_x_at11/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740OsAffx.27445.2.S1_x_at7/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750Os.44810.1.S1_at11/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03750Os.52574.2.S1_x_at1/116+1478059..1484508dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27444.1.S1_at--933--5951Chr06:1455737..1455761 (25 bp)
GAGAAGTTTCTCGTATCCTTAAATC
LOC_Os06g03690
OsAffx.27444.1.S1_at--358--6911Chr06:1455749..1455773 (25 bp)
GTATCCTTAAATCCCATGCCTTTTT
LOC_Os06g03690
OsAffx.27444.1.S1_at--577--3531Chr06:1455763..1455787 (25 bp)
CATGCCTTTTTCTGTCTATCTTTAA
LOC_Os06g03690
OsAffx.27444.1.S1_at--763--7151Chr06:1455776..1455800 (25 bp)
GTCTATCTTTAATCTTTCATTTGCA
LOC_Os06g03690
OsAffx.27444.1.S1_at--197--9031Chr06:1455797..1455860 (25 bp)
TGCACAAATTCTGCTGGTCCTTCAC
LOC_Os06g03690
OsAffx.27444.1.S1_at--618--4171Chr06:1455866..1455890 (25 bp)
CCCAAGATATCTTCCGACCATTTGT
LOC_Os06g03690
OsAffx.27444.1.S1_at--384--2731Chr06:1455915..1455966 (25 bp)
AAGCAAAGAAGCAAGACATCCTGGT
LOC_Os06g03690
OsAffx.27444.1.S1_at--1031--7651Chr06:1456022..1456046 (25 bp)
GGGATCCAATTCTACTCTGTTTTGT
LOC_Os06g03690
OsAffx.27444.1.S1_at--1089--4371Chr06:1456027..1456051 (25 bp)
CCAATTCTACTCTGTTTTGTTGATT
LOC_Os06g03690
OsAffx.27444.1.S1_at--945--9071Chr06:1456077..1456097 (21 bp)
TGCTATGGATGCTTTGCAAGGCTAC
LOC_Os06g03690
OsAffx.27444.1.S1_at--848--8991Chr06:1457128..1457148 (21 bp)
TGCAAGGCTACAAATTCGATGAACA
LOC_Os06g03690
Target Sequence 
GAGAAGTTTCTCGTATCCTTAAATCCCATGCCTTTTTCTGTCTATCTTTAATCTTTCATTTGCACAAATTCTGCTGGTCC
TTCACCTTCCCCCAAGATATCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGTAAGCAAAGAAGCAAGACATCC
TGGTGGGGATCCAATTCTACTCTGTTTTGTTGATTTTGAAACTGCTAGTCAAGCTGCTATTGCTATGGATGCTTTGCAAG
GCTACAAATTCGATGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis