Browse Element(s) Details


OsAffx.27449.1.S1_at

Description tigr:9634.m00302
TID=OsAffx.27449.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0390011/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative
LOC_Os06g03900OsAffx.27449.1.S1_at11/116+1571423..1572803esterase, putative, expressed
LOC_Os06g03910Os.4289.1.S1_at11/116+1573604..1576094hydrolase, NUDIX family protein, expressed
LOC_Os06g03920Os.4290.1.S1_at11/116+1579343..1580869expressed protein
LOC_Os06g03920OsAffx.17234.1.S1_at1/116+1579343..1580869expressed protein
LOC_Os06g03930Os.4291.1.S1_at11/116+1580992..1584766Cytochrome P450 family protein, expressed
LOC_Os06g03940Os.4292.2.S1_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_x_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_at8/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.4292.1.S1_x_at4/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940OsAffx.30727.1.S1_at1/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03950OsAffx.15251.1.S1_at11/116+1597468..1597776hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27449.1.S1_at--924--4891Chr06:1571436..1571460 (25 bp)
GCTTCACCATTGATCAAGCCAGGAA
LOC_Os06g03900
OsAffx.27449.1.S1_at--1010--1671Chr06:1571452..1571476 (25 bp)
AGCCAGGAACTACACGCCCAAAATT
LOC_Os06g03900
OsAffx.27449.1.S1_at--729--9851Chr06:1571462..1571486 (25 bp)
TACACGCCCAAAATTGTCGACCAAA
LOC_Os06g03900
OsAffx.27449.1.S1_at--566--3171Chr06:1571473..1571497 (25 bp)
AATTGTCGACCAAATTGCAAGTGGC
LOC_Os06g03900
OsAffx.27449.1.S1_at--968--3291Chr06:1571483..1571503 (21 bp)
CAAATTGCAAGTGGCGTCGAGAAGC
LOC_Os06g03900
OsAffx.27449.1.S1_at--1074--1631Chr06:1572281..1572305 (25 bp)
AGCGATGGGTGCAGTGGACATCATC
LOC_Os06g03900
OsAffx.27449.1.S1_at--812--9611Chr06:1572301..1572325 (25 bp)
TCATCGTCCCGGGAGTCATGCCGTT
LOC_Os06g03900
OsAffx.27449.1.S1_at--1141--1151Chr06:1572314..1572338 (25 bp)
AGTCATGCCGTTCGGATGCTTCGCG
LOC_Os06g03900
OsAffx.27449.1.S1_at--432--5711Chr06:1572384..1572408 (25 bp)
GACTACGGCTGCCTGAAGCCGCTCA
LOC_Os06g03900
OsAffx.27449.1.S1_at--244--9191Chr06:1572393..1572417 (25 bp)
TGCCTGAAGCCGCTCAACGAGCTGG
LOC_Os06g03900
OsAffx.27449.1.S1_at--694--9851Chr06:1572636..1572660 (25 bp)
TACAACTGGGAGTACGTGGCGCGGT
LOC_Os06g03900
Target Sequence 
GCTTCACCATTGATCAAGCCAGGAACTACACGCCCAAAATTGTCGACCAAATTGCAAGTGGCGTCGAGAAGCTGATAGCG
ATGGGTGCAGTGGACATCATCGTCCCGGGAGTCATGCCGTTCGGATGCTTCGCGCTCTACCTGACGGAGCTCAAGAGCAG
CAACAAGTCCGACTACGACGACTACGGCTGCCTGAAGCCGCTCAACGAGCTGGCCATCCACCACAACTCGCTGCTGCAGA
CCAGCCTCGCCGCCGTCCAGGCCAGGCACCGCAGGTCGCCGTCGTCATCGCCGTCGTCGCCGTCGCCGGCGGCGGCGGTG
AGGATCATGTACGCCGACTACTACGCCGTCGTGGCGGAGATGATGCAGGCCCCGGCGCGGCTGGGGTTCAGGAGCGGCAT
CGCGGCGTGCTGCGGCGCGGGGGGCGGCGAGTACAACTGGGAGTACGTGGCGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis