Browse Element(s) Details


OsAffx.27462.1.S1_at

Description tigr:9634.m00452
TID=OsAffx.27462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0530011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27462.1.S1_at--687--5991Chr06:2384657..2384681 (25 bp)
GAGACGGCGTCTCCAGTAACAGCCT
LOC_Os06g05300
OsAffx.27462.1.S1_at--499--1171Chr06:2384671..2384695 (25 bp)
AGTAACAGCCTACGTCGCCATCGCG
LOC_Os06g05300
OsAffx.27462.1.S1_at--197--9351Chr06:2384691..2384715 (25 bp)
TCGCGTCGCTGGTCTGGACCTCGGT
LOC_Os06g05300
OsAffx.27462.1.S1_at--1022--3891Chr06:2384699..2384723 (25 bp)
CTGGTCTGGACCTCGGTCGTCCGCG
LOC_Os06g05300
OsAffx.27462.1.S1_at--35--7691Chr06:2384807..2384831 (25 bp)
GGGTACTTCGGCAATTGCGTCGCGG
LOC_Os06g05300
OsAffx.27462.1.S1_at--860--1511Chr06:2384943..2384967 (25 bp)
AGCAGCTGGAGGACCCGCTCGGCGG
LOC_Os06g05300
OsAffx.27462.1.S1_at--1004--7711Chr06:2384978..2385002 (25 bp)
GGGTGGCTCCAGTTCCACCTGAGCC
LOC_Os06g05300
OsAffx.27462.1.S1_at--259--9051Chr06:2385153..2385177 (25 bp)
TGCAGGTGTCCGTGTCGCTCGACGA
LOC_Os06g05300
OsAffx.27462.1.S1_at--890--1871Chr06:2385174..2385198 (25 bp)
ACGAGGCGCACATGGATGCCTTCGA
LOC_Os06g05300
OsAffx.27462.1.S1_at--143--2111Chr06:2385183..2385207 (25 bp)
ACATGGATGCCTTCGAGACCAGCTG
LOC_Os06g05300
OsAffx.27462.1.S1_at--1008--7971Chr06:2385187..2385211 (25 bp)
GGATGCCTTCGAGACCAGCTGGTTT
LOC_Os06g05300
Target Sequence 
GAGACGGCGTCTCCAGTAACAGCCTACGTCGCCATCGCGTCGCTGGTCTGGACCTCGGTCGTCCGCGCCAAGCCGCACGA
CGCCGCCGACGAGGCCTACCTCATGGTCACCGCCGACTGCCGCCGCCGCCTCCGCCCACCGATCGACCCGGGGTACTTCG
GCAATTGCGTCGCGGCGTGCTACGCGCGCGCCAACGTGGGCGCCCTCCGCCGCGGCGGCGGCGACAACGGCGGCGACGAC
GAGGGGCTCGCGCGCGCCGCGGCGGCGATCGGGGCGGCGATCCGCGAGCAGCTGGAGGACCCGCTCGGCGGCGACATCGA
GGGGTGGCTCCAGTTCCACCTGAGCCTCCCGGCGGCGAGGCTGACGGCGGTGGGGTCGTCGCACCGGTTCATGGCGTACG
AGACGGACCTCGGGTGGGGCGCGCCGAGCCGCGTCGAGCTCGTGTCGCCGTTCGCGCGCGAGCTGGTGATGCTGCTCGGC
GCGGCGGGCGGCGGCGTGCAGGTGTCCGTGTCGCTCGACGAGGCGCACATGGATGCCTTCGAGACCAGCTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis