Browse Element(s) Details


OsAffx.27468.1.S1_at

Description tigr:9634.m00518
TID=OsAffx.27468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0592011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05920OsAffx.27468.1.S1_at11/116+2709263..2711459Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g05930Os.9093.1.S1_at5/116+2713766..2714068hypothetical protein
LOC_Os06g05940Os.56370.1.S1_at11/116+2716877..2720618expressed protein
LOC_Os06g05950Os.27626.1.S1_at11/116+2723130..2725536expressed protein
LOC_Os06g05960NANA6+2731801..2732106hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27468.1.S1_at--814--8011Chr06:2710822..2710846 (25 bp)
GGAGGCACATCGGTTACTCTTTAAA
LOC_Os06g05920
OsAffx.27468.1.S1_at--995--6891Chr06:2710849..2710873 (25 bp)
GTATCATGAAGATCCGGTTCCAGAC
LOC_Os06g05920
OsAffx.27468.1.S1_at--41--8871Chr06:2710885..2710909 (25 bp)
TGATGCTCTGATGCTTTGTTGCAGC
LOC_Os06g05920
OsAffx.27468.1.S1_at--548--9791Chr06:2710921..2710945 (25 bp)
TAAGAGTGTAGTGGCCCTCCTGAAG
LOC_Os06g05920
OsAffx.27468.1.S1_at--342--2711Chr06:2711015..2711039 (25 bp)
AAGCTTGATGGGTCTGTGTACAGTA
LOC_Os06g05920
OsAffx.27468.1.S1_at--50--8211Chr06:2711076..2711100 (25 bp)
GGAAGGCTCTCAGCTTTCATAAACA
LOC_Os06g05920
OsAffx.27468.1.S1_at--10--10371Chr06:2711117..2711141 (25 bp)
TTTTCCCCTAATTCAACAAGCACCA
LOC_Os06g05920
OsAffx.27468.1.S1_at--1053--1251Chr06:2711188..2711212 (25 bp)
AGATAATGCCATTCAGGACTTACTG
LOC_Os06g05920
OsAffx.27468.1.S1_at--301--5691Chr06:2711212..2711236 (25 bp)
GACTTGTTGTCCACTAGCAGATGCA
LOC_Os06g05920
OsAffx.27468.1.S1_at--19--2931Chr06:2711246..2711270 (25 bp)
AAGGCTCTTATTGACCTCAATCGGA
LOC_Os06g05920
OsAffx.27468.1.S1_at--425--8131Chr06:2711324..2711348 (25 bp)
GGACTACTTCCAAGCTCAGGGTGAA
LOC_Os06g05920
Target Sequence 
GGAGGCACATCGGTTACTCTTTAAACTGTATCATGAAGATCCGGTTCCAGACAATATTAAGTATGATGCTCTGATGCTTT
GTTGCAGCAAAGCTGAGTTTAAGAGTGTAGTGGCCCTCCTGAAGGGATTTTGCATGAAAGGCTTGATGAAGGAAGCTGAT
AAAGTATACCAGTCGATGTTGGACAGAAACTGGAAGCTTGATGGGTCTGTGTACAGTATACTTATTCATGGGCATTGCAG
GGGAGGAAATGTTAGGAAGGCTCTCAGCTTTCATAAACAAATGTTGCGGAGTGGGTTTTCCCCTAATTCAACAAGCACCA
TTTCATTGGTTAGGGGTTTATTTGAAGAGGGGATGGTTGTGGAAGCAGATAATGCCATTCAGGACTTACTGACTTGTTGT
CCACTAGCAGATGCAGAAGCATCAAAGGCTCTTATTGACCTCAATCGGAAGGAAGGGATGGACTACTTCCAAGCTCAGGG
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis