Browse Element(s) Details


OsAffx.27485.1.S1_at

Description tigr:9634.m00651
TID=OsAffx.27485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0718010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07130Os.34965.2.S1_s_at11/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07130Os.7011.1.S2_x_at1/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07140Os.4216.1.S1_a_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140Os.4216.2.S1_x_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150OsAffx.22574.1.S1_at8/116+3424691..3425038hypothetical protein
LOC_Os06g07160Os.33725.1.S1_at11/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07160Os.51581.1.S1_at1/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07170NANA6+3432634..3433780hypothetical protein
LOC_Os06g07180OsAffx.27485.1.S1_at10/116+3436575..3437625expressed protein
LOC_Os06g07190Os.49094.1.S1_at8/116+3439121..3442076expressed protein
LOC_Os06g07200OsAffx.15295.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200Os.18952.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200OsAffx.15295.1.S1_x_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220Os.4223.1.S1_s_at11/116+3454801..3455812transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230Os.9247.2.S1_x_at11/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230Os.9247.1.S1_at9/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27485.1.S1_at--1153--2331Chr06:3437504..3437527 (24 bp)
AAAGACAGGGCGTGCCATGCGATCC
LOC_Os06g07180
OsAffx.27485.1.S1_at--1088--7311Chr06:3437387..3437471 (25 bp)
GTGCTCTTCTGTCCATTGAATCGAT
LOC_Os06g07180
OsAffx.27485.1.S1_at--881--7271Chr06:3437330..3437354 (25 bp)
GGGCGGAAATTGTTTGGCAACTCGT
LOC_Os06g07180
OsAffx.27485.1.S1_at--670--8231Chr06:3437315..3437339 (25 bp)
GGCAACTCGTGCAAGATTCCAGGTC
LOC_Os06g07180
OsAffx.27485.1.S1_at--501--9211NONE
TCCAGGTCCATTGAATCGGTAGGTT
NONE
OsAffx.27485.1.S1_at--1090--1011Chr06:3437059..3437083 (25 bp)
AGGTTTTGAGGCGAGAGGATCCCAC
LOC_Os06g07180
OsAffx.27485.1.S1_at--853--5591Chr06:3437022..3437046 (25 bp)
GAAATTGTTCGGCAACTCACGCGAG
LOC_Os06g07180
OsAffx.27485.1.S1_at--687--2011Chr06:3436686..3437032 (25 bp)
ACTCACGCGAGATTCCAGATTTGTT
LOC_Os06g07180
OsAffx.27485.1.S1_at--42--6531Chr06:3436669..3436693 (25 bp)
GATTTGTTGCGCCTCAGGCAGCTGC
LOC_Os06g07180
OsAffx.27485.1.S1_at--555--471Chr06:3436642..3436666 (25 bp)
ATCTGACCAGCGGTGCTTCAAGTAA
LOC_Os06g07180
OsAffx.27485.1.S1_at--893--2311Chr06:3436619..3436643 (25 bp)
AAAGGTTTAGCGTTTGAGCACATCA
LOC_Os06g07180
Target Sequence 
AAAGACAGGGCGTGCCATGCGATCCGCCGCTCGGCGATGCTGCACCTGCCGAGCTGCGTGCTCTTCTGTCCATTGAATCG
ATTGGTTTTGAGGCGAGAGGAGACCACCAACGCCGGGCGGAAATTGTTTGGCAACTCGTGCAAGATTCCAGGTCCATTGA
ATCGGTAGGTTTTGAGGCGAGAGGATCCCACCAACGCCGGGCAGAAATTGTTCGGCAACTCACGCGAGATTCCAGATTTG
TTGCGCCTCAGGCAGCTGCTGATCTGACCAGCGGTGCTTCAAGTAAAGGTTTAGCGTTTGAGCACATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis