Browse Element(s) Details


OsAffx.27576.1.S1_at

Description tigr:9634.m01175
TID=OsAffx.27576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g120009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11980Os.7831.1.S1_at8/116+6394404..6396222expressed protein
LOC_Os06g11990Os.7521.1.S1_at11/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_x_at9/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.7149.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.33974.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein
LOC_Os06g12010OsAffx.27577.1.S1_at11/116+6423295..6423809hypothetical protein
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27576.1.S1_at--762--5651NONE
GACAGGGCCTATCATGCGACATGTA
NONE
OsAffx.27576.1.S1_at--697--411NONE
ATCATGCGACATGTACGGGTGGCCG
NONE
OsAffx.27576.1.S1_at--55--8371Chr06:6418904..6418928 (25 bp)
GGCGGTCATGCTTCTCGATCGTGCA
LOC_Os06g12000
OsAffx.27576.1.S1_at--831--631Chr06:6418897..6418921 (25 bp)
ATGCTTCTCGATCGTGCATCAAGAA
LOC_Os06g12000
OsAffx.27576.1.S1_at--563--9391Chr06:6418890..6418914 (25 bp)
TCGATCGTGCATCAAGAACCCGTCT
LOC_Os06g12000
OsAffx.27576.1.S1_at--308--7331Chr06:6418884..6418908 (25 bp)
GTGCATCAAGAACCCGTCTCGCCTG
LOC_Os06g12000
OsAffx.27576.1.S1_at--684--4791Chr06:6418788..6418812 (25 bp)
GCTCGCCGCGTCATCCCAATAATAA
LOC_Os06g12000
OsAffx.27576.1.S1_at--361--4631Chr06:6418781..6418805 (25 bp)
GCGTCATCCCAATAATAACCGGCGC
LOC_Os06g12000
OsAffx.27576.1.S1_at--323--9131Chr06:6418742..6418766 (25 bp)
TGCTGTCCGCGGTGGGCTATGCCTT
LOC_Os06g12000
OsAffx.27576.1.S1_at--807--8611Chr06:6418670..6418694 (25 bp)
TGGTGTGCTCGGAGGGTTGCTACGA
LOC_Os06g12000
OsAffx.27576.1.S1_at--155--6671Chr06:6418655..6418679 (25 bp)
GTTGCTACGAGGACGTGATCCGCGC
LOC_Os06g12000
Target Sequence 
GACAGGGCCTATCATGCGACATGTACGGGTGGCCGCCGCCGGATCCGCAGGCTCCCGCCGACGATCCCGTCGCTCCGGCG
CGCCGGGAACGCGCCGTGGGCGCTGGCGAGGGCGCGCACCGCGGACGGGCGGCTCGTGATCTCGACGGAGCCCGCGCCGC
CGCGGGGGCGCGTCGTGGCGACGAAGGCCGAGGGGCGGCTTGTCCTCGACCTCGTCGAGCGCGGCGACAGCCCGCCCCCG
CCGCCGCCTCGCCGGCGGTCATGCTTCTCGATCGTGCATCAAGAACCCGTCTCGCCTGCTGCTGCGGCGGCGGCATGCGA
CGACGACGACTACGGCGTCGAGGAGGCGAGCGCCGCCGAGCGAGCATCCGCTCGCCGCGTCATCCCAATAATAACCGGCG
CCCCGGCGCCGGCAATGCTGTCCGCGGTGGGCTATGCCTTCTCGCCGTCGCTGTCGCTGCACCCGGCTGTGGCGCCGCTG
CCGCCGCTGGTGTGCTCGGAGGGTTGCTACGAGGACGTGATCCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis