Browse Element(s) Details


OsAffx.27765.1.S1_at

Description tigr:9634.m02175
TID=OsAffx.27765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2219011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22140Os.9453.1.S1_at11/116+12847659..12851831Thioredoxin reductase 1, putative, expressed
LOC_Os06g22150OsAffx.15548.1.S1_x_at11/116+12859094..12859591hypothetical protein
LOC_Os06g22160OsAffx.14865.1.S1_at1/116+12861431..12863379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22170OsAffx.828.1.S1_x_at1/116+12864625..12865886hypothetical protein
LOC_Os06g22180OsAffx.22759.1.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22180OsAffx.22759.2.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22190OsAffx.27765.1.S1_at11/116+12872878..12874333hypothetical protein
LOC_Os06g22190OsAffx.15708.1.S1_at1/116+12872878..12874333hypothetical protein
LOC_Os06g22200OsAffx.4898.1.S1_at11/116+12880637..12881450hypothetical protein
LOC_Os06g22210Os.46314.2.S1_x_at5/116+12884508..12885812transposon protein, putative, unclassified
LOC_Os06g22210Os.47114.1.S1_x_at1/116+12884508..12885812transposon protein, putative, unclassified
LOC_Os06g22220OsAffx.18377.1.S1_x_at1/116+12889324..12892490hypothetical protein
LOC_Os06g22230NANA6+12892845..12898070retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27765.1.S1_at--484--5271Chr06:12873431..12873455 (25 bp)
GAAGGAGGCCTCACCGTGCGCCAGG
LOC_Os06g22190
OsAffx.27765.1.S1_at--462--4251Chr06:12873348..12873372 (25 bp)
CCGTGGCGGCTCCATGGGCGGGACG
LOC_Os06g22190
OsAffx.27765.1.S1_at--985--3991Chr06:12873250..12873274 (25 bp)
CGTGATTCGCCGACCGGAGATGAGA
LOC_Os06g22190
OsAffx.27765.1.S1_at--620--7631Chr06:12873224..12873248 (25 bp)
GGGACGGCAGATGCTCACCTCAAGC
LOC_Os06g22190
OsAffx.27765.1.S1_at--729--5031Chr06:12873218..12873242 (25 bp)
GCAGATGCTCACCTCAAGCGAAGGG
LOC_Os06g22190
OsAffx.27765.1.S1_at--377--931Chr06:12873083..12873107 (25 bp)
AGGCAAGCGGCTGGAGGCACCAAAC
LOC_Os06g22190
OsAffx.27765.1.S1_at--192--8551Chr06:12873072..12873096 (25 bp)
TGGAGGCACCAAACACAGCATCGGC
LOC_Os06g22190
OsAffx.27765.1.S1_at--492--1711Chr06:12873065..12873089 (25 bp)
ACCAAACACAGCATCGGCCTCGAGT
LOC_Os06g22190
OsAffx.27765.1.S1_at--191--2151Chr06:12873058..12873082 (25 bp)
ACAGCATCGGCCTCGAGTGCACGGC
LOC_Os06g22190
OsAffx.27765.1.S1_at--724--3491Chr06:12872977..12873001 (25 bp)
CATGGCGAAGCCAGTGGGACCAACG
LOC_Os06g22190
OsAffx.27765.1.S1_at--113--8471Chr06:12872938..12872962 (25 bp)
TGGCGGGCAACTGGAGGCGGTAGAA
LOC_Os06g22190
Target Sequence 
GAAGGAGGCCTCACCGTGCGCCAGGCGGTGAGGGGCGACGGGCGCGGCGGCGAGCTCCTCGGGACGACGGCGGGACGGCG
CTCCCGTGGCGGCTCCATGGGCGGGACGCGGCGGACGAGGGCGGCCGCGACCTGGGGATGGAGGGAGAGGGGTTAGGAGG
GGGAGAGGTGGCTCACGGCGGCGTGATTCGCCGACCGGAGATGAGAGGGGACGGCAGATGCTCACCTCAAGCGAAGGGGA
CGGAGTTCCGACGGCGATTAACGAAGAGGGAGGGGTGGCCGTCGTGCGGCTCGACACCGCGAAGACGGAGGGGTTGTCGG
CGCTGCCGGACGTGGCTCCGAGCACCGGAGGCAAGCGGCTGGAGGCACCAAACACAGCATCGGCCTCGAGTGCACGGCGG
AGGTGGAGTTTCGGTGATGATTGGAGGAGGAGGGGTGGACGGGAAGCGGCAAGGCATGGCGAAGCCAGTGGGACCAACGG
TGGCGTGCGGCGGTGGCGGGCAACTGGAGGCGGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis