Browse Element(s) Details


OsAffx.4898.1.S1_at

Description tigr:9634.m02176
TID=OsAffx.4898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2220011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22150OsAffx.15548.1.S1_x_at11/116+12859094..12859591hypothetical protein
LOC_Os06g22160OsAffx.14865.1.S1_at1/116+12861431..12863379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22170OsAffx.828.1.S1_x_at1/116+12864625..12865886hypothetical protein
LOC_Os06g22180OsAffx.22759.1.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22180OsAffx.22759.2.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22190OsAffx.27765.1.S1_at11/116+12872878..12874333hypothetical protein
LOC_Os06g22190OsAffx.15708.1.S1_at1/116+12872878..12874333hypothetical protein
LOC_Os06g22200OsAffx.4898.1.S1_at11/116+12880637..12881450hypothetical protein
LOC_Os06g22210Os.46314.2.S1_x_at5/116+12884508..12885812transposon protein, putative, unclassified
LOC_Os06g22210Os.47114.1.S1_x_at1/116+12884508..12885812transposon protein, putative, unclassified
LOC_Os06g22220OsAffx.18377.1.S1_x_at1/116+12889324..12892490hypothetical protein
LOC_Os06g22230NANA6+12892845..12898070retrotransposon protein, putative, unclassified
LOC_Os06g22240OsAffx.22947.1.S1_x_at4/116+12902976..12906850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22240OsAffx.22947.5.S1_x_at3/116+12902976..12906850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22240OsAffx.22947.2.S1_x_at3/116+12902976..12906850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22240OsAffx.22947.5.S1_at2/116+12902976..12906850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22240OsAffx.22947.3.S1_x_at2/116+12902976..12906850retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4898.1.S1_at--505--7571Chr06:12880703..12880727 (25 bp)
GGGCGACCTCGCATTGGATCCGGCA
LOC_Os06g22200
OsAffx.4898.1.S1_at--526--5871Chr06:12880813..12880837 (25 bp)
GAGCCGGGAGCTAGGACGCCGATGC
LOC_Os06g22200
OsAffx.4898.1.S1_at--946--551Chr06:12880840..12880864 (25 bp)
ATCCGGCAAGGAGGACGGCTGCCTC
LOC_Os06g22200
OsAffx.4898.1.S1_at--63--9431Chr06:12880887..12880911 (25 bp)
TCGTGCAGATCTGCCGACAACGGTG
LOC_Os06g22200
OsAffx.4898.1.S1_at--232--2211Chr06:12880903..12881189 (25 bp)
ACAACGGTGGCAGGCTAGGGCAAGT
LOC_Os06g22200
OsAffx.4898.1.S1_at--825--7511Chr06:12881202..12881226 (25 bp)
GTGGAGATGGCGTCACACCCGCGCG
LOC_Os06g22200
OsAffx.4898.1.S1_at--816--9331Chr06:12881242..12881266 (25 bp)
TCGCCGTCGTTGGAGCTCGTCACTG
LOC_Os06g22200
OsAffx.4898.1.S1_at--345--551Chr06:12881284..12881308 (25 bp)
ATCCCTACGAGTCGCCATCGAGCTT
LOC_Os06g22200
OsAffx.4898.1.S1_at--110--3551Chr06:12881299..12881323 (25 bp)
CATCGAGCTTGTCATCCCCATCTAG
LOC_Os06g22200
OsAffx.4898.1.S1_at--328--7132Chr06:12881309..12881333 (25 bp)
GTCATCCCCATCTAGCGACGAGGAG
LOC_Os06g22200
OsAffx.4898.1.S1_at--912--3891Chr06:12881344..12881368 (25 bp)
CTGGGTGGATCTGTGTCGCGTCTGC
LOC_Os06g22200
Target Sequence 
GGGCGACCTCGCATTGGATCCGGCAGCGGCGGCTCGTCCTGTGCGGATCCGGTGTCGGTGACAACGGAGGGCAATGGGAG
CAGCGGATTTGATGGCGGCGGCGCGCGGTGGAGCCGGGAGCTAGGACGCCGATGCGGATCCGGCAAGGAGGACGGCTGCC
TCGGGCAGCGGCAGCGGCGCCGCCTCGTGCAGATCTGCCGACAACGGTGGCAGGCTAGGGCAAGTGAAGGGACGGCTGTG
GAGATGGCGTCACACCCGCGCGTGGGAGGAGAGGGCCTCGCCGTCGTTGGAGCTCGTCACTGCTGTCCACCTCCTCCCCA
TCCCTACGAGTCGCCATCGAGCTTGTCATCCCCATCTAGCGACGAGGAGGCGGCAGCAGCTGGGTGGATCTGTGTCGCGT
CTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis