Browse Element(s) Details


OsAffx.27783.1.S1_at

Description tigr:9634.m02282
TID=OsAffx.27783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2318010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23160Os.17321.1.S1_at11/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23160OsAffx.17544.1.S1_at1/116+13513671..13520720Nucleotidyl transferase family protein, expressed
LOC_Os06g23170OsAffx.23712.1.S1_at2/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23170OsAffx.242.1.S1_at1/116+13523541..13531870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23180OsAffx.27783.1.S1_at10/116+13537871..13539417hypothetical protein
LOC_Os06g23180OsAffx.24637.2.S1_x_at1/116+13537871..13539417hypothetical protein
LOC_Os06g23190OsAffx.4912.1.S1_at9/116+13540655..13543835Leucine Rich Repeat family protein, expressed
LOC_Os06g23200NANA6+13548049..13550508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23210Os.7041.1.S1_at1/116+13553711..13554286ribosomal protein L30 containing protein, expressed
LOC_Os06g23220NANA6+13556095..13558145GRF zinc finger family protein
LOC_Os06g23230Os.14919.1.S1_at7/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230Os.56216.1.S1_at2/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230OsAffx.29313.1.S1_at1/116+13558545..13565502transposon protein, putative, Mutator sub-class
LOC_Os06g23230OsAffx.27770.1.S1_x_at1/116+13558545..13565502transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27783.1.S1_at--123--1371Chr06:13537965..13537989 (25 bp)
AGAGCAGGATACGATCCGACCGCCT
LOC_Os06g23180
OsAffx.27783.1.S1_at--145--8091Chr06:13538056..13538080 (25 bp)
GGAGCTCGTCACAGTGGCTGCACGT
LOC_Os06g23180
OsAffx.27783.1.S1_at--306--8491Chr06:13538070..13538094 (25 bp)
TGGCTGCACGTCCTGTTCATGGCAA
LOC_Os06g23180
OsAffx.27783.1.S1_at--460--3871Chr06:13538082..13538106 (25 bp)
CTGTTCATGGCAACACGAGCGGTGC
LOC_Os06g23180
OsAffx.27783.1.S1_at--738--2571Chr06:13538144..13538168 (25 bp)
AACGGCGCGGGCACACAGAGCTACG
LOC_Os06g23180
OsAffx.27783.1.S1_at--920--3291Chr06:13538155..13538179 (25 bp)
CACACAGAGCTACGCGACTACTGAT
LOC_Os06g23180
OsAffx.27783.1.S1_at--1162--9891Chr06:13538173..13538197 (25 bp)
TACTGATGACGACGCACTCGAGCCG
LOC_Os06g23180
OsAffx.27783.1.S1_at--342--8931Chr06:13538290..13538314 (25 bp)
TGACGGGTTCCACACCTGGAGGTCC
LOC_Os06g23180
OsAffx.27783.1.S1_at--1119--3351NONE
CACCGCCGGCATTCGATTGAGGAGG
NONE
OsAffx.27783.1.S1_at--1004--4371Chr06:13539342..13539366 (25 bp)
GCCAATGACGATGGTCTTGCCAGTT
LOC_Os06g23180
OsAffx.27783.1.S1_at--768--6251Chr06:13539351..13539375 (25 bp)
GATGGTCTTGCCAGTTGACAGCAAA
LOC_Os06g23180
Target Sequence 
AGAGCAGGATACGATCCGACCGCCTCGCCATCGTTGCCTTCTCTGGCGCGCCGCTCGGAGCAGCAGCTAGTGGTGCCGGC
CCTCCACGGCGGGAGCTCGTCACAGTGGCTGCACGTCCTGTTCATGGCAACACGAGCGGTGCCCGAGTCGCGGCAGTTGG
CGGAGCTGAACGACTACGCAACGGCGCGGGCACACAGAGCTACGCGACTACTGATGACGACGCACTCGAGCCGGTCAACC
CCGCCACCCGCAGCCTCGCCTCGTACTCAGGCCATGCCATTGCCACCTCCTCCTCGGGCCTTCCCCGTGCGACGGATGAG
GAGGATGACGGGTTCCACACCTGGAGGTCCCGCTGCATCGTCGGCTGCGATGGCGAGTACCACCGCCGGCATTCGATTGA
GGAGGCCATGATTGGTGGGGGCAAGCCAATGACGATGGTCTTGCCAGTTGACAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis