Browse Element(s) Details


OsAffx.27881.1.S1_at

Description tigr:9634.m02923
TID=OsAffx.27881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3039010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30350Os.47130.4.A1_x_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30350Os.37083.2.S1_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30370Os.16218.1.S1_at11/116+17538926..17541483MOTHER of FT and TF1 protein, putative, expressed
LOC_Os06g30380Os.20068.1.S1_at11/116+17549122..17552472expressed protein
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed
LOC_Os06g30430OsAffx.27882.1.S1_at11/116+17583539..17585353NB-ARC domain containing protein
LOC_Os06g30440Os.13846.2.S1_at11/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.2.S1_x_at10/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.1.S1_at9/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27881.1.S1_at--924--6151Chr06:17559090..17559114 (25 bp)
GAGGTTGCAGTTGATAAGCAGCTTC
LOC_Os06g30390
OsAffx.27881.1.S1_at--243--9791Chr06:17559104..17559128 (25 bp)
TAAGCAGCTTCAACATGTGCTGCAA
LOC_Os06g30390
OsAffx.27881.1.S1_at--136--2932Chr06:17559159..17559183 (25 bp)
AAGGAACTTGCGGTCTTACTGAAAG
LOC_Os06g30390
OsAffx.27881.1.S1_at--958--5971Chr06:17559185..17559209 (25 bp)
GAGAACAGCTCTAGAACATCAGAAT
LOC_Os06g30390
OsAffx.27881.1.S1_at--959--7991Chr06:17559244..17559268 (25 bp)
GGATGTATGATAGACTAGCCATGGA
LOC_Os06g30390
OsAffx.27881.1.S1_at--404--9991Chr06:17559259..17559283 (25 bp)
TAGCCATGGAAAGTCTAGAGGTCAT
LOC_Os06g30390
OsAffx.27881.1.S1_at--862--2611Chr06:17559297..17559321 (25 bp)
AACCTGGAAAAGCTCTCACTTGATG
LOC_Os06g30390
OsAffx.27881.1.S1_at--861--5391Chr06:17559329..17559353 (25 bp)
GAAGCATCAAGCTGTCTCTGAATCC
LOC_Os06g30390
OsAffx.27881.1.S1_at--206--7171Chr06:17559342..17559366 (25 bp)
GTCTCTGAATCCAAATCTTATCTTG
LOC_Os06g30390
OsAffx.27881.1.S1_at--447--10451NONE
TTACTATGCTAAGGCCAATTCTTGT
NONE
OsAffx.27881.1.S1_at--521--8451Chr06:17560243..17560267 (25 bp)
GGCCAATTCTTGTAGCCATGGTATT
LOC_Os06g30390
Target Sequence 
GAGGTTGCAGTTGATAAGCAGCTTCAACATGTGCTGCAAGAGCTTGCAAATGAGAAAACAGATAGAGAAAAGGAACTTGC
GGTCTTACTGAAAGAGAGAACAGCTCTAGAACATCAGAATCAGGAACTTATGAATTTGAGGTCAGAGATTGATGGGATGT
ATGATAGACTAGCCATGGAAAGTCTAGAGGTCATGACTGAGGAACAAAACCTGGAAAAGCTCTCACTTGATGTGAATAGG
AAGCATCAAGCTGTCTCTGAATCCAAATCTTATCTTGAAGCTGAGAAGGAAGCTCTTACTATGCTAAGGCCAATTCTTGT
AGCCATGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis