Browse Element(s) Details


OsAffx.27904.1.S1_at

Description tigr:9634.m03063
TID=OsAffx.27904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g327109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32660Os.26886.3.S1_x_at3/116+18994779..18997641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32660Os.26886.1.S1_x_at2/116+18994779..18997641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32674OsAffx.27902.1.S1_at11/116+19000926..19003322hypothetical protein
LOC_Os06g32674Os.26886.2.S1_s_at8/116+19000926..19003322hypothetical protein
LOC_Os06g32674Os.26886.6.S1_s_at7/116+19000926..19003322hypothetical protein
LOC_Os06g32674OsAffx.16467.1.S1_at4/116+19000926..19003322hypothetical protein
LOC_Os06g32690OsAffx.4984.1.S1_at11/116+19009761..19010533hypothetical protein
LOC_Os06g32700NANA6+19014285..19014956hypothetical protein
LOC_Os06g32710OsAffx.27904.1.S1_at9/116+19016037..19018120hypothetical protein
LOC_Os06g32720Os.49333.1.S1_at11/116+19019420..19024459Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g32730OsAffx.27905.1.S1_at11/116+19026101..19029662Eukaryotic initiation factor, putative, expressed
LOC_Os06g32740Os.10827.1.S1_x_at8/116+19038412..19042904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32740Os.46055.2.S1_x_at3/116+19038412..19042904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32740Os.20341.1.S1_s_at1/116+19038412..19042904transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27904.1.S1_at--13--10191Chr06:19018113..19018137 (25 bp)
TATACTCGTGTGTTGCAATGGGCCA
NONE
OsAffx.27904.1.S1_at--682--7551Chr06:19018094..19018118 (25 bp)
GGGCCAGACCCATACAATTTGGGAT
LOC_Os06g32710
OsAffx.27904.1.S1_at--586--4251Chr06:19018017..19018041 (25 bp)
CCGGAGATGGTGGTTACGAACATGA
LOC_Os06g32710
OsAffx.27904.1.S1_at--296--5571Chr06:19017986..19018010 (25 bp)
GAAAGATACAATGCACGGCGATAGT
LOC_Os06g32710
OsAffx.27904.1.S1_at--1133--7051NONE
GTAAGAAGAGCGAGCTCCATTGGCT
NONE
OsAffx.27904.1.S1_at--284--3611Chr06:19016354..19016378 (25 bp)
CATTGGCTTGCCCATGGCGGACAAC
LOC_Os06g32710
OsAffx.27904.1.S1_at--869--4671Chr06:19016338..19016362 (25 bp)
GCGGACAACCGCTCAGTGTAGTCGA
LOC_Os06g32710
OsAffx.27904.1.S1_at--985--2211Chr06:19016207..19016231 (25 bp)
ACAAGCTCTGGTGGTCTCCTCGAGA
LOC_Os06g32710
OsAffx.27904.1.S1_at--955--9371Chr06:19016188..19016212 (25 bp)
TCGAGACGTTGCACGAGCTCAGGGA
LOC_Os06g32710
OsAffx.27904.1.S1_at--928--1911Chr06:19016164..19016188 (25 bp)
ACGTGGCCGCTGTGAGCGAGCCTAA
LOC_Os06g32710
OsAffx.27904.1.S1_at--501--3911Chr06:19016100..19016124 (25 bp)
CTGGAGTGATCGATTGACAATAGCA
LOC_Os06g32710
Target Sequence 
TATACTCGTGTGTTGCAATGGGCCAGACCCATACAATTTGGGATGGGCTAGGAAGGTCAATTGAGATGGATAGGGAAGGC
GGATTGAGGATAAGCACCGGAGATGGTGGTTACGAACATGAAGGTGTGAAAGATACAATGCACGGCGATAGTAAGAAGAG
CGAGCTCCATTGGCTTGCCCATGGCGGACAACCGCTCAGTGTAGTCGACGGCGCGGTCGTGCGGCATGCCACTGTCACCG
GCCTCGTCCTTACCACCAAGTCCCCACCTGACCGCGAGCGCGTCACCGAGCTCATCTCCCGCTTCCGTGGCGCCACAAGC
TCTGGTGGTCTCCTCGAGACGTTGCACGAGCTCAGGGACGTGGCCGCTGTGAGCGAGCCTAACAGGAAGCTCCTCACGGC
CGTCCCCGGCACGGTGGAGTGCTGGAGTGATCGATTGACAATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis