Browse Element(s) Details


OsAffx.28033.1.S1_s_at

Description tigr:9634.m03945
TID=OsAffx.28033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4103011/11secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28033.1.S1_s_at--714--8231Chr06:24501766..24501790 (25 bp)
GGCACCGACAGGAACTTCCTCCTGG
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--601--5651Chr06:24501760..24501784 (25 bp)
GACAGGAACTTCCTCCTGGAGCCAT
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--25--2531Chr06:24501754..24501778 (25 bp)
AACTTCCTCCTGGAGCCATTGCAGA
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--219--5871Chr06:24501742..24501766 (25 bp)
GAGCCATTGCAGAGCCTCCAGGACG
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--265--71Chr06:24501737..24501761 (25 bp)
ATTGCAGAGCCTCCAGGACGAGTTC
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--868--9031Chr06:24501735..24501759 (25 bp)
TGCAGAGCCTCCAGGACGAGTTCTA
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--600--3451Chr06:24501724..24501748 (25 bp)
CAGGACGAGTTCTACACCGTCTACT
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--742--1871Chr06:24501720..24501744 (25 bp)
ACGAGTTCTACACCGTCTACTTCAA
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--322--9891Chr06:24501703..24501727 (25 bp)
TACTTCAACGTCCTCACCAAGTGAT
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--534--9671Chr06:24501690..24501714 (25 bp)
TCACCAAGTGATCCACCGCCATGTG
LOC_Os06g41030
OsAffx.28033.1.S1_s_at--873--8851Chr06:24501682..24501706 (25 bp)
TGATCCACCGCCATGTGACAGCGAG
LOC_Os06g41030
Target Sequence 
GGCACCGACAGGAACTTCCTCCTGGAGCCATTGCAGAGCCTCCAGGACGAGTTCTACACCGTCTACTTCAACGTCCTCAC
CAAGTGATCCACCGCCATGTGACAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28033.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis