Browse Element(s) Details


OsAffx.28140.1.S1_at

Description tigr:9634.m04557
TID=OsAffx.28140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46780OsAffx.15958.1.S1_at9/116+28405288..28406220Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46799Os.53303.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.5843.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.23700.1.A1_at1/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46820Os.17675.1.S1_at11/116+28425962..28429243expressed protein
LOC_Os06g46830OsAffx.28140.1.S1_at11/116+28429780..28430406hypothetical protein
LOC_Os06g46840OsAffx.30517.1.S1_at3/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46840Os.44826.1.S1_at1/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46850OsAffx.25502.2.S1_at4/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46850Os.47130.4.A1_x_at1/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46860OsAffx.28141.1.S1_at10/116+28439984..28443176hypothetical protein
LOC_Os06g46860OsAffx.988.1.S1_at1/116+28439984..28443176hypothetical protein
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28140.1.S1_at--541--171Chr06:28430298..28430322 (25 bp)
ATTTTCTACTCTCCACCAGACGTTT
LOC_Os06g46830
OsAffx.28140.1.S1_at--328--9191Chr06:28430287..28430311 (25 bp)
TCCACCAGACGTTTCGTACTTCTCT
LOC_Os06g46830
OsAffx.28140.1.S1_at--719--9071Chr06:28430247..28430271 (25 bp)
TGCTATGCTGGCTTCCCTGCATGCA
LOC_Os06g46830
OsAffx.28140.1.S1_at--493--691Chr06:28430165..28430189 (25 bp)
ATGAGCGTCGCGTGTTCGTCTGCAA
LOC_Os06g46830
OsAffx.28140.1.S1_at--452--7811Chr06:28430129..28430153 (25 bp)
GGTCATGGGTTCAAGTGTTCGTTAC
LOC_Os06g46830
OsAffx.28140.1.S1_at--133--8811Chr06:28430114..28430138 (25 bp)
TGTTCGTTACGATGATCGCGTCTCT
LOC_Os06g46830
OsAffx.28140.1.S1_at--199--4651Chr06:28430097..28430121 (25 bp)
GCGTCTCTCTTCTCGGCGTGCGGTG
LOC_Os06g46830
OsAffx.28140.1.S1_at--669--2091Chr06:28430066..28430090 (25 bp)
ACATCTACCGGAGCCAGTGCTGGAA
LOC_Os06g46830
OsAffx.28140.1.S1_at--126--8551Chr06:28429975..28429999 (25 bp)
TGGAGACGGTCGACCCGACGTCACC
LOC_Os06g46830
OsAffx.28140.1.S1_at--180--431Chr06:28429943..28429967 (25 bp)
ATCATCACCATCACTATGGCGCCAA
LOC_Os06g46830
OsAffx.28140.1.S1_at--857--3931Chr06:28429813..28429837 (25 bp)
CGGCGGCAACGAAAGCTTCGGCGCA
LOC_Os06g46830
Target Sequence 
ATTTTCTACTCTCCACCAGACGTTTCGTACTTCTCTCCACCCGCGCTCCCCTGCTATGCTGGCTTCCCTGCATGCACTGG
CGGCGGCGGCGGCGGCAATGATGGTTCTGGCGGCGACGGCCATTCCGGCGGGGATGAGCGTCGCGTGTTCGTCTGCAACT
GCAAGTCATGGTCATGGGTTCAAGTGTTCGTTACGATGATCGCGTCTCTCTTCTCGGCGTGCGGTGGCGCCTACATCTAC
CGGAGCCAGTGCTGGAAGAGCTTGAAGAAGAAGAAGAAGCCACCGCCGCCGCTTCCTCTGTATCGTCCGCGTCCGCCGCC
GGCTGGAGACGGTCGACCCGACGTCACCGTACACCATCATCACCATCACTATGGCGCCAACGGCGGTGGCGGGCACAGCG
CCAATGGCGGCGGCGGACTCGACGGCAGCAGCAGCATCGGGACCAATGGCGGCGACATCGGCGGCAACGACGACCTCTAC
GGCGGCGGCGGCAACGAAAGCTTCGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis