Browse Element(s) Details


OsAffx.28141.1.S1_at

Description tigr:9634.m04560
TID=OsAffx.28141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4686010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46799Os.53303.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.5843.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.23700.1.A1_at1/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46820Os.17675.1.S1_at11/116+28425962..28429243expressed protein
LOC_Os06g46830OsAffx.28140.1.S1_at11/116+28429780..28430406hypothetical protein
LOC_Os06g46840OsAffx.30517.1.S1_at3/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46840Os.44826.1.S1_at1/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46850OsAffx.25502.2.S1_at4/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46850Os.47130.4.A1_x_at1/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46860OsAffx.28141.1.S1_at10/116+28439984..28443176hypothetical protein
LOC_Os06g46860OsAffx.988.1.S1_at1/116+28439984..28443176hypothetical protein
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed
LOC_Os06g46890Os.14747.1.S1_at11/116+28456955..28462486expressed protein
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28141.1.S1_at--1074--10431Chr06:28441000..28441024 (25 bp)
TTAGCCCGGGCCAAATTGTCAGTTA
LOC_Os06g46860
OsAffx.28141.1.S1_at--645--7291Chr06:28440805..28440829 (25 bp)
GTGATAAACGCCTGTTTTCGACCTC
LOC_Os06g46860
OsAffx.28141.1.S1_at--1158--10611Chr06:28440377..28440813 (25 bp)
TTCGACCTCTATTGCAATGGATCCT
LOC_Os06g46860
OsAffx.28141.1.S1_at--738--831NONE
ATGGATCCTGATCTCATTGGTCGCA
NONE
OsAffx.28141.1.S1_at--335--4931Chr06:28440339..28440363 (25 bp)
GCATTCCCATGTCGTACTACAGTAC
LOC_Os06g46860
OsAffx.28141.1.S1_at--955--2271Chr06:28440266..28440290 (25 bp)
AAATGCTACATTTCAACCGACTCCT
LOC_Os06g46860
OsAffx.28141.1.S1_at--409--7871Chr06:28440223..28440247 (25 bp)
GGTTACATGCCAGCTGACAACGGTA
LOC_Os06g46860
OsAffx.28141.1.S1_at--769--6311Chr06:28440103..28440127 (25 bp)
GATGACTACACCTTTACTCCTATTG
LOC_Os06g46860
OsAffx.28141.1.S1_at--500--8811Chr06:28440080..28440104 (25 bp)
TGTTGGCGATCAGTTTTTCTACGGG
LOC_Os06g46860
OsAffx.28141.1.S1_at--337--2211Chr06:28440040..28440064 (25 bp)
ACAAGCTCGGGAACCATGTTGCGCG
LOC_Os06g46860
OsAffx.28141.1.S1_at--390--731Chr06:28440025..28440049 (25 bp)
ATGTTGCGCGCTAATGTCGTTTACC
LOC_Os06g46860
Target Sequence 
TTAGCCCGGGCCAAATTGTCAGTTATGGTTCAGCTTGGATCATAACTGATAATGTTGATGATCCAGTATCGAATTTAGAA
GTCATTCAGATCGGTTGGAGGGTCGAGCCAGGTGATAAACGCCTGTTTTCGACCTCTATTGCAATGGATCCTGATCTCAT
TGGTCGCATTCCCATGTCGTACTACAGTACACTATCTAACTCAGCAACTAACATCTGGTTTGGAGGCATGGTGGCTACAA
ATGCTACATTTCAACCGACTCCTCCGCTTCCGATGGGCAGCGGTTACATGCCAGCTGACAACGGTAACATGGCAGCGTCC
ATGAAGAACATTCAACTCATCGATGAGCAAGGGCGAGCCTGGTCAGCAGGAAATGGTTTAGTTGGCTTCTCCACCAAGAA
GGATGACTACACCTTTACTCCTATTGTTGGCGATCAGTTTTTCTACGGGGGCCCCTTCCAGCTCACAAGCTCGGGAACCA
TGTTGCGCGCTAATGTCGTTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis