Browse Element(s) Details


OsAffx.28154.1.S1_at

Description tigr:9634.m04633
TID=OsAffx.28154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=metal ATPase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4755011/11Cadmium/zinc-transporting ATPase HMA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0004008molecular_functioncopper-exporting ATPase activity
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28154.1.S1_at--701--9051Chr06:28790360..28790384 (25 bp)
TGCATGTGCTCCTGCTAGTTAGCGC
LOC_Os06g47550
OsAffx.28154.1.S1_at--518--10051Chr06:28790345..28790369 (25 bp)
TAGTTAGCGCCTCCAGCTGTCATGA
LOC_Os06g47550
OsAffx.28154.1.S1_at--931--3371Chr06:28790332..28790356 (25 bp)
CAGCTGTCATGATCTTGGCAAACTT
LOC_Os06g47550
OsAffx.28154.1.S1_at--654--3271Chr06:28790314..28790338 (25 bp)
CAAACTTGTAGCTCATGTGCGGCAG
LOC_Os06g47550
OsAffx.28154.1.S1_at--981--8691Chr06:28790299..28790323 (25 bp)
TGTGCGGCAGGCAAGAGTCCACCAA
LOC_Os06g47550
OsAffx.28154.1.S1_at--1029--3031Chr06:28790276..28790300 (25 bp)
AATCCGCTATACTTCGCCGTGTGCA
LOC_Os06g47550
OsAffx.28154.1.S1_at--406--8091Chr06:28790250..28790274 (25 bp)
GGAGCCGTGGACACTGGCCTCTAAA
LOC_Os06g47550
OsAffx.28154.1.S1_at--772--6211Chr06:28790222..28790246 (25 bp)
GAGGCTGGCAAATCAGGCACACGCA
LOC_Os06g47550
OsAffx.28154.1.S1_at--1062--1591Chr06:28790197..28790221 (25 bp)
AGCTGCACTGCATATTATTTTCTTT
LOC_Os06g47550
OsAffx.28154.1.S1_at--194--2031Chr06:28790042..28790066 (25 bp)
ACTAGCCCACTCCAAATTTTGATTC
LOC_Os06g47550
OsAffx.28154.1.S1_at--366--171Chr06:28790027..28790051 (25 bp)
ATTTTGATTCTCTGTTCACCACTGC
LOC_Os06g47550
Target Sequence 
TGCATGTGCTCCTGCTAGTTAGCGCCTCCAGCTGTCATGATCTTGGCAAACTTGTAGCTCATGTGCGGCAGGCAAGAGTC
CACCAATCCGCTATACTTCGCCGTGTGCATGGAGCCGTGGACACTGGCCTCTAAATTTGAGGCTGGCAAATCAGGCACAC
GCAAGCTGCACTGCATATTATTTTCTTTTTTACTAGCAGTATTCCCTATACTAATGATAGTATGAATCAACCAATAAAGC
ACGTTTTAATCATGATAACATGGTGGCAAACACATATAAGAAACATATACATAAATCGATAGTTTTGTGCTAATTTTCAC
TAGCCCACTCCAAATTTTGATTCTCTGTTCACCACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis