Browse Element(s) Details


OsAffx.28271.1.S1_x_at

Description tigr:9635.m00405
TID=OsAffx.28271.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0474011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04709NANA7+2091281..2091911NA
LOC_Os07g04720OsAffx.28269.1.S1_x_at11/117+2092690..2093702hypothetical protein
LOC_Os07g04720OsAffx.19640.1.S1_at1/117+2092690..2093702hypothetical protein
LOC_Os07g04730OsAffx.28270.1.S1_at11/117+2097358..2101933expressed protein
LOC_Os07g04740OsAffx.28271.1.S1_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04740OsAffx.28271.1.S1_x_at11/117+2109667..2110007hypothetical protein
LOC_Os07g04750OsAffx.22501.1.S1_at11/117+2110415..2111924F-box domain containing protein
LOC_Os07g04760OsAffx.28272.1.S1_at11/117+2114544..2116079calcineurin-like phosphoesterase family protein, putative
LOC_Os07g04770OsAffx.29313.1.S1_at1/117+2117708..2120085transposon protein, putative, Mutator sub-class
LOC_Os07g04780NANA7+2121062..2121824hypothetical protein
LOC_Os07g04790OsAffx.10267.1.S1_at11/117+2123108..2123884F-box domain containing protein
LOC_Os07g04800OsAffx.28273.2.S1_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.2.S1_s_at11/117+2124790..2125299hypothetical protein
LOC_Os07g04800OsAffx.28273.1.S1_at4/117+2124790..2125299hypothetical protein
LOC_Os07g04810Os.54639.1.S1_at11/117+2126764..2128349Protein kinase domain containing protein, expressed
LOC_Os07g04820Os.52735.1.S1_at10/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04820OsAffx.24030.1.S1_x_at3/117+2130336..2131800Protein kinase domain containing protein
LOC_Os07g04830OsAffx.16088.1.S1_x_at11/117+2133407..2134336hypothetical protein
LOC_Os07g04840Os.12627.1.S1_at11/117+2134902..2136687Oxygen-evolving enhancer protein 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28271.1.S1_x_at--865--5171Chr07:2109697..2109721 (25 bp)
GCAATGAAGTCCATGATCGCCCTCT
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--761--711Chr07:2109709..2109733 (25 bp)
ATGATCGCCCTCTTGCCGTGTTCGA
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--801--4291Chr07:2109717..2109741 (25 bp)
CCTCTTGCCGTGTTCGATTGCAGGA
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--788--3631Chr07:2109720..2109744 (25 bp)
CTTGCCGTGTTCGATTGCAGGAGCA
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--486--6551Chr07:2109851..2109875 (25 bp)
GATTATCTTAAACTTCGACAAGGAC
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--898--2051Chr07:2109862..2109886 (25 bp)
ACTTCGACAAGGACACGTGGGTGGC
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--189--8471Chr07:2109883..2109907 (25 bp)
TGGCGCATCGCAAGATGGCTGACGC
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--403--531Chr07:2109889..2109913 (25 bp)
ATCGCAAGATGGCTGACGCCAGCGT
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--1097--851Chr07:2109897..2109921 (25 bp)
ATGGCTGACGCCAGCGTAGGACCTA
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--360--1091Chr07:2109909..2109933 (25 bp)
AGCGTAGGACCTACAGGACGTCGAG
LOC_Os07g04740
OsAffx.28271.1.S1_x_at--964--10051Chr07:2109913..2109937 (25 bp)
TAGGACCTACAGGACGTCGAGAAGA
LOC_Os07g04740
Target Sequence 
GCAATGAAGTCCATGATCGCCCTCTTGCCGTGTTCGATTGCAGGAGCANNNTGCTCGATTATCTTAAACTTCGACAAGGA
CACGTGGGTGGCGCATCGCAAGATGGCTGACGCCAGCGTAGGACCTACAGGACGTCGAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28271.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis